View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_21 (Length: 323)
Name: NF13880_low_21
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_21 |
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| [»] scaffold0214 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 67 - 316
Target Start/End: Original strand, 43922484 - 43922732
Alignment:
| Q |
67 |
aatacccaagcttctccattaaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacct |
166 |
Q |
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| T |
43922484 |
aatacccaagcttcttcattaaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatga-ggcagccaccccacct |
43922582 |
T |
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| Q |
167 |
ttgaggatgccgacaaaaacgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccgga |
266 |
Q |
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||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
43922583 |
ttgaggatgccgacagaaacacacttactagccccataaccaagaaagaagtgacagccgcccttcactccatgaaatcctacaaagcctctggtccgga |
43922682 |
T |
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| Q |
267 |
tgagtttcaatgtatcttctttaaatagtattggcatattcttcgagatg |
316 |
Q |
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| T |
43922683 |
tgggtttcaatgtatcttctttaaatagtattggcacattgttggagatg |
43922732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 48846322 - 48846529
Alignment:
| Q |
86 |
taaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacctttgaggatgccgacaaaaa |
185 |
Q |
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| T |
48846322 |
taaaatatttcaaaaaccttttttgtgggaatcaccat---------aaccatgtcttcgatgaaggaagccaccccagcctagaggatgccgacagaaa |
48846412 |
T |
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| Q |
186 |
cgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttc |
285 |
Q |
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| T |
48846413 |
cgcactcactagccccataaccaagaaagaagtgacagccgcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttc |
48846512 |
T |
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| Q |
286 |
tttaaatagtattggca |
302 |
Q |
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| T |
48846513 |
tttaaacagtattggca |
48846529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 1579942 - 1579712
Alignment:
| Q |
86 |
taaaatatttcaaaaatcttttatgtgggaatcaccatcatcatcataaccatgtcttcaatgaaggcagccaccccacctttgaggatgccgacaaaaa |
185 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||| | ||||||||||||| ||| |
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| T |
1579942 |
taaaatatttcaaaaaccttttatgtgggaatcaccatcatcaccataaccatgtcttcaatgaatgtatccaccccaccctagaggatgccgacagaaa |
1579843 |
T |
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| Q |
186 |
cgcacttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttc |
285 |
Q |
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| T |
1579842 |
tactctcgctagccccataaccaagaaagaagtgactgccgctcttcactccatgaaaccctacaaagcccctggttcggatgagtttcaatgtatcttc |
1579743 |
T |
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| Q |
286 |
tttaaatagtattggcatattcttcgagatg |
316 |
Q |
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| T |
1579742 |
tttaaaaaatattggcacattgttggagatg |
1579712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 8438 - 8564
Alignment:
| Q |
190 |
cttactagcctcataaccaagaaagaagtgacagccgcccttcactccatgaaaccctacaaaacctctggtccggatgagtttcaatgtatcttcttta |
289 |
Q |
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| T |
8438 |
cttactaggcccttaacaaaaaaagaagtgacaaccgccctccactccatgaagccctacaaagcccctggccctgatggttttcattgtattttcttta |
8537 |
T |
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| Q |
290 |
aatagtattggcatattcttcgagatg |
316 |
Q |
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| T |
8538 |
aacaattttggcacattgttggagatg |
8564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 23133222 - 23133180
Alignment:
| Q |
226 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
268 |
Q |
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| T |
23133222 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
23133180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 11896658 - 11896700
Alignment:
| Q |
226 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
268 |
Q |
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| T |
11896658 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
11896700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 20284359 - 20284401
Alignment:
| Q |
226 |
gcccttcactccatgaaaccctacaaaacctctggtccggatg |
268 |
Q |
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|||||| |||||||||||||||||||| || |||||||||||| |
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| T |
20284359 |
gcccttaactccatgaaaccctacaaagcccctggtccggatg |
20284401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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