View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_22 (Length: 316)
Name: NF13880_low_22
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_22 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 51 - 299
Target Start/End: Complemental strand, 9586023 - 9585775
Alignment:
| Q |
51 |
gtcaccggaaccctacccactcttcccttcgatctggttgctgagattttttgtaggcttccggtgaagctcctccttcaacttcagtgcctcggcaaat |
150 |
Q |
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| T |
9586023 |
gtcaccggaaccctacccactcttcccttcgatctggttgctgagattttttgtaggcttccggtgaagctcctccttcaacttcagtgcctcggcaaat |
9585924 |
T |
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| Q |
151 |
cgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttcagttttcaaaggctttccagcacaaccatcacctcatcgttaacatcccggg |
250 |
Q |
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| T |
9585923 |
cgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttcagttttcaaaggctttccagcacaaccatcacctcatcgttaacatcccggg |
9585824 |
T |
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| Q |
251 |
aggcataggtaagctaattatgaaggattgcacaattccctctgttttc |
299 |
Q |
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| T |
9585823 |
agacataggtaagctaattatgaaggattgcacaattccctctgttttc |
9585775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 764487 - 764199
Alignment:
| Q |
10 |
agaagaaaagaaaatacactaagaggcggagatcgcctaccgtcaccggaaccctacccactcttcccttcgatctggttgctgagattttttgtaggct |
109 |
Q |
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| T |
764487 |
agaagaaaagaaaatacgctaagaggcggagatcgcctacaatcaccggaaccttaccagctcttcccttcgatctggttgctgagattttctgtaggct |
764388 |
T |
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| Q |
110 |
tccggtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttcagttttcaaag |
209 |
Q |
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| T |
764387 |
tccagtgaagctcctccttcaacttcagtgcctcggaaaattgtggaaatctctaatttccgatcctaaattcacaaagaagcatcttcaattttcaaag |
764288 |
T |
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| Q |
210 |
gctttccagcacaaccatcacctcatcgttaacatcccgggaggcataggtaagctaattatgaaggattgcacaattccctctgtttt |
298 |
Q |
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| T |
764287 |
gttttccagcacaaccatcaccttatcgcttacaccacgggagtcatagataagctaattctgaaggattccacaattccctctatttt |
764199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 24418293 - 24418164
Alignment:
| Q |
69 |
actcttcccttcgatctggttgctgagattttttgtaggcttccggtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatct |
168 |
Q |
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| T |
24418293 |
actcttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatct |
24418194 |
T |
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| Q |
169 |
ccgatcctaaattcacaaagaagcatcttc |
198 |
Q |
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| T |
24418193 |
ctgatcccaaattcgcaaacaagcaccttc |
24418164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 88390 - 88483
Alignment:
| Q |
105 |
aggcttccggtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttc |
198 |
Q |
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| T |
88390 |
aggcttccagtgaagcttctcctacaacttagttgcctctgcaagtcatggaaatctctaatctccgatccaaaatttacaaaaaagcaccttc |
88483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 39298422 - 39298507
Alignment:
| Q |
114 |
gtgaagctcctccttcaacttcagtgcctcggcaaatcgttgaaatctctaatctccgatcctaaattcacaaagaagcatcttca |
199 |
Q |
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| T |
39298422 |
gtgaagctcctccttcaacttcaatgtctcggaaagttctggaaatctctaatctcagatcccaaattcgcgaagaagcaccttca |
39298507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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