View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13880_low_24 (Length: 256)

Name: NF13880_low_24
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13880_low_24
NF13880_low_24
[»] chr4 (4 HSPs)
chr4 (19-247)||(23062259-23062487)
chr4 (30-247)||(32880670-32880874)
chr4 (88-173)||(43992238-43992323)
chr4 (76-170)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (19-247)||(28592866-28593093)
[»] chr6 (2 HSPs)
chr6 (19-247)||(25907261-25907489)
chr6 (94-197)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (19-247)||(21279261-21279489)
chr8 (92-201)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (160-247)||(30302015-30302101)
chr5 (130-176)||(14779531-14779577)
chr5 (94-170)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (76-226)||(9817132-9817282)
chr7 (76-226)||(10719057-10719207)
chr7 (157-203)||(20483935-20483981)
chr7 (88-176)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (76-226)||(15229641-15229790)
chr1 (79-208)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (92-194)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (92-201)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (94-200)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 23062487 - 23062259
Alignment:
19 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 118  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062487 tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 23062388  T
119 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062387 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 23062288  T
219 taatgatgaaggggtacgaattgatgatg 247  Q
    ||||||||||||||||||||||| |||||    
23062287 taatgatgaaggggtacgaattgctgatg 23062259  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 32880670 - 32880874
Alignment:
30 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 129  Q
    ||||||||||||| |||||||||||||||||||||||||||             ||||||||||||||||||||||||| || |||||||||||||||||    
32880670 aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca 32880756  T
130 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 229  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
32880757 cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag 32880856  T
230 gggtacgaattgatgatg 247  Q
    |||||||||||| |||||    
32880857 gggtacgaattgctgatg 32880874  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
88 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc 173  Q
    |||||||||||||||||||||||| ||||  ||||||| || || ||||||||||||||||| || ||||| || |||||||||||    
43992323 atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc 43992238  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
76 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 170  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||| |  |||||||| |||||||||||  | || || |||||||||||    
19318928 atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca 19318834  T

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Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 28593093 - 28592866
Alignment:
19 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
28593093 tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac 28592995  T
119 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
28592994 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga 28592895  T
219 taatgatgaaggggtacgaattgatgatg 247  Q
    ||||||||||||||||||||||| |||||    
28592894 taatgatgaaggggtacgaattgctgatg 28592866  T

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Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 25907489 - 25907261
Alignment:
19 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 118  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907489 tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 25907390  T
119 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25907389 gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga 25907290  T
219 taatgatgaaggggtacgaattgatgatg 247  Q
    ||||||||||||||||||||||| |||||    
25907289 taatgatgaaggggtacgaattgctgatg 25907261  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
94 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 193  Q
    |||||||||| ||| ||| ||||  |||| || || ||||||||||||||||| || |||||||| | ||| ||||||||  |||| || ||||||||||    
21695849 caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga 21695948  T
194 aggt 197  Q
    ||||    
21695949 aggt 21695952  T

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Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 21279489 - 21279261
Alignment:
19 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 118  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || |    
21279489 tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac 21279390  T
119 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 218  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||   |||||||| |||||||| ||||||||||||||||||| |||||||||| ||||    
21279389 gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga 21279290  T
219 taatgatgaaggggtacgaattgatgatg 247  Q
    |||||||||| |||||||| ||| |||||    
21279289 taatgatgaacgggtacgagttgctgatg 21279261  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
92 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 191  Q
    |||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || |||||    
28164989 ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa 28164890  T
192 gaaggtaaac 201  Q
    ||| ||||||    
28164889 gaaagtaaac 28164880  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 30302015 - 30302101
Alignment:
160 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgatgatg 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
30302015 aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 30302101  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
130 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 176  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||||||    
14779531 cactggtatcgtgatggggacttgaacaccaattttttttatgcttc 14779577  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
94 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 170  Q
    |||||||||| ||||||||||||  |||| || || ||||||||||| |||||  ||||||| || ||||| |||||    
20584724 caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca 20584800  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
76 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 175  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
9817282 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 9817183  T
176 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 226  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
9817182 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 9817132  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
76 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 175  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
10719207 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 10719108  T
176 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 226  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
10719107 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 10719057  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
157 accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg 203  Q
    |||||||||||||||||||| |||||||  ||||| |||||||||||    
20483935 accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg 20483981  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
88 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 176  Q
    ||||| ||||| ||||| |||||||| ||||| || || || || |||||||||||||||||  | || || || ||||||||||||||    
21115432 atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc 21115520  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
76 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 175  Q
    ||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| |||    || ||||||    
15229641 atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt 15229739  T
176 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 226  Q
    ||||||| ||  |||| ||||||||||| |||||||||||||| |||||||    
15229740 cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg 15229790  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
79 acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag 178  Q
    |||||| ||||||||||||| ||||| |||||| | || ||||| ||||  || |||||||||| ||| ||  ||||||| |||||||||||||| ||      
10505436 acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta 10505337  T
179 ccacgtcaagaaagaaggtaaaccgcatta 208  Q
    |||| || | |||||||||||||| |||||    
10505336 ccacatctaaaaagaaggtaaaccacatta 10505307  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 540 - 438
Alignment:
92 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 191  Q
    ||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || |||||    
540 ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa 441  T
192 gaa 194  Q
    |||    
440 gaa 438  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
92 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 191  Q
    ||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || ||  ||||    
26815 ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa 26716  T
192 gaaggtaaac 201  Q
    ||| ||||||    
26715 gaaagtaaac 26706  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
94 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 193  Q
    |||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || |||||||    
34932178 caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga 34932277  T
194 aggtaaa 200  Q
    | |||||    
34932278 aagtaaa 34932284  T

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