View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_27 (Length: 239)
Name: NF13880_low_27
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19800785 - 19800566
Alignment:
| Q |
1 |
taagcatcaatcgtaccaaattcatacacataaaagagacacgaaaattgatatatgatcagcagcataaacatatcaaatcgatattaaaaccgaacct |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| |
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| T |
19800785 |
taagcatcaattgtaccaaattcatacacataagagagacaagaaaattgatatatgatcagca---taaacataacaaattgctattaaaaccgaacct |
19800689 |
T |
|
| Q |
101 |
caagagtcaacaacaaagttccttcacccatggattgaaagagagattagttctccatagcaagcagctgccttagggtttctatttcataaagtgtgaa |
200 |
Q |
| |
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||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||| | || ||||| |
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| T |
19800688 |
caagagt-aacaacaaagttccttcaccaatggatcgaaagagagattagttctccatagcaagcggttgccttaggatttctattttctgaaacgtgaa |
19800590 |
T |
|
| Q |
201 |
tacagaatgagcagccctaggtga |
224 |
Q |
| |
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| ||||||||||||||||| |||| |
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| T |
19800589 |
tgcagaatgagcagccctacgtga |
19800566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 30142577 - 30142363
Alignment:
| Q |
2 |
aagcatcaatcgtaccaaattcatacacataaaagagacacgaaaattgatatatgatcagcagcataaacatatcaaatcgatattaaaaccgaacctc |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||| |
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| T |
30142577 |
aagcatcaattgtaccaaattcatacacataagagagacaagaaaattgatatatgatcagct---taaacataacaaattgctattaaaaccgaacctc |
30142481 |
T |
|
| Q |
102 |
aagagtcaacaacaaagttccttcacccatggattgaaagagagattagttctccatagcaagcagctgccttagggtttctatttcataaagtgtgaat |
201 |
Q |
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|||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||| |
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| T |
30142480 |
aagagt-aacaacaaagttccttcaccaatggatcgatagagagattagttctccatagcaagcggctgccttagggtttctattttctgaaacgtgaat |
30142382 |
T |
|
| Q |
202 |
acagaatgagcagccctag |
220 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
30142381 |
gcagactgagcagccctag |
30142363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30742131 - 30742346
Alignment:
| Q |
1 |
taagcatcaatcgtaccaaattcatacacataaaagagacacgaaaattgatatatgatcagcagcataaacatatcaaatcgatattaaaaccgaacct |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| |
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|
| T |
30742131 |
taagcatcaattgtaccaaattcatacacataagagagacaagaaaattgatatatgatcagca---taaacataacaaattgctattaaaaccgaacct |
30742227 |
T |
|
| Q |
101 |
caagagtcaacaacaaagttccttcacccatggattgaaagagagattagttctccatagcaagcagctgccttagggtttctatttcataaagtgtgaa |
200 |
Q |
| |
|
||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| |
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| T |
30742228 |
caagagtca-caacaaagttcctttgccaatggatcgaaagagagattagttctccatagcaagcggctgccttagggtttctattttctgaaacgtgaa |
30742326 |
T |
|
| Q |
201 |
tacagaatgagcagccctag |
220 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
30742327 |
tgcagaatgagcagccctag |
30742346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 22304110 - 22303939
Alignment:
| Q |
1 |
taagcatcaatcgtaccaaattcatacacataaaagagacacgaaaattgatatatgatcagcagcataaacatatcaaatcgatattaaaaccgaacct |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||| | |||||||||||||||| |
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|
| T |
22304110 |
taagcatcaattgtaccaaattcatacacataagagagacaagaaaattgatatatgatc---agcataaacataacaaattgctattaaaaccgaacct |
22304014 |
T |
|
| Q |
101 |
caagagtcaacaacaaagttccttcacccatggattgaaagagagattagttctccatagcaagcagctgccttag |
176 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||| ||||| |||||| |
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|
| T |
22304013 |
caagagt-aacaacaaagttccgtcaccaatggatcgaaagagagattaattctccatagcaaccagctaccttag |
22303939 |
T |
|
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