View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13880_low_29 (Length: 236)
Name: NF13880_low_29
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 25013595 - 25013781
Alignment:
| Q |
24 |
aaatgaacaaagaggtaagattttagtgtagaaagattgtgtaccatgtattgtcatagaaaaaggtatttatatggtactaagggcacaaacaatctta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25013595 |
aaatgaacaaagaggtaagattttagtgtagaaagattgtgtaccgtgtattatcatataaaaaggtatttatatggtactaagggcacaaacaatctta |
25013694 |
T |
|
| Q |
124 |
tggttattgttatggacggtattctcatgaaaacctttgaattatgtgcagtattcatggacggtattcatgtgctaatattgtgtttggtat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
25013695 |
tggttattgttatggacggtattctcatgaaaacctttgaattatgtacagcattcatggac---at---tgtgctaatattgtgtttggtat |
25013781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University