View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13880_low_3 (Length: 676)
Name: NF13880_low_3
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 163 - 666
Target Start/End: Complemental strand, 17773331 - 17772828
Alignment:
| Q |
163 |
taaaacacatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatccttcctcctgcagcttctatcctttccca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17773331 |
taaaacacatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatctttcctcctgcagcttctatcctttccca |
17773232 |
T |
|
| Q |
263 |
ctcatcctctctatttggctgcaaacaggaaataaagtttcctgcatcagatcacttcagcttctaagagtccagcaaacaaattgtgaaacaaatgcct |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17773231 |
ctcatcctctctatttggctgcaaacaggaaataaagtttcctgcatcagatcacttcagcttctaagagtccagcaaacaaattgtgaaacaaatgcct |
17773132 |
T |
|
| Q |
363 |
tactttttggtcgatagacaacggaagtgcttcttttcctcgacacaagactgctcttgaatcaccgcaattcgcaactattatgtggttttgagtcaaa |
462 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
17773131 |
tactttttggtcaatcgacaatggcagtgcttcttttcctcgacacaagaccgctcttgaatccccacaattcgcaactattatgtggttttgagtcaaa |
17773032 |
T |
|
| Q |
463 |
attgcaaccagtgcagttgatccaacagtctcgggagcaagagtttcttcagtacttaactcagatccgtcgttaccgttctttccaacattagcttcag |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
17773031 |
attgcaaccagtgcagtggatccaacagtctcgggagcaagagtttcctcagtacttgactcagatccgtcattactgttctttccaacattagcttcag |
17772932 |
T |
|
| Q |
563 |
gaactcctacaatcacatcatctactttttgaaagcaattggtgagtactttcttccattgatcttgccaattgtctttttcattgttttcggataaact |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
17772931 |
gaactcctacaatcacatcatctactttttgaaagcaattggtgagtactttcttccattggtcttgccaattgtctttttccttattttcggataaact |
17772832 |
T |
|
| Q |
663 |
tgat |
666 |
Q |
| |
|
|||| |
|
|
| T |
17772831 |
tgat |
17772828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 169 - 509
Target Start/End: Original strand, 52218567 - 52218914
Alignment:
| Q |
169 |
acatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatccttcctcctgcagcttctatcctttcccactcatc |
268 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||| |||||| ||||| ||||||| ||||||||||| ||||| || ||| ||| |||||| |
|
|
| T |
52218567 |
acatacctatggaccttgacatggccaagacaccaagaactctgtatcctttccaatgtatgactcttcctcctgctgcttcgattcttgccctctcatc |
52218666 |
T |
|
| Q |
269 |
ctctctatttggctgcaaacaggaaataaagtttcctgcatcagatcacttcagcttctaagagtccagcaaacaaattgtgaaa-------caaatgcc |
361 |
Q |
| |
|
||||| ||| ||||||||| ||| || |||||| || ||||| |||||||| ||| | | |||| | ||||||||| ||||||| |
|
|
| T |
52218667 |
ctctcgattcggctgcaaaagtgaagtacagtttcttgtatcagccaacttcagcgtctgacataaattcaaaaatattgtgaaataactatgaaatgcc |
52218766 |
T |
|
| Q |
362 |
ttactttttggtcgatagacaacggaagtgcttcttttcctcgacacaagactgctcttgaatcaccgcaattcgcaactattatgtggttttgagtcaa |
461 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||| || ||| ||||||| ||||| ||||| || ||||| ||||| ||||||||| ||||| | || |
|
|
| T |
52218767 |
ttactttgtggtcagaagacaacgcaatggcttctttcccacgatacaagacagctctcgaatccccacaatttgcaacaattatgtgggtttgatttaa |
52218866 |
T |
|
| Q |
462 |
aattgcaaccagtgcagttgatccaacagtctcgggagcaagagtttc |
509 |
Q |
| |
|
||| ||||||| |||||| || ||| ||||||| |||||||||||||| |
|
|
| T |
52218867 |
aatggcaaccactgcagtggagccagcagtctcaggagcaagagtttc |
52218914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University