View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_33 (Length: 225)
Name: NF13880_low_33
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 39246834 - 39246639
Alignment:
| Q |
20 |
gaaggcaatccattgtgcaagattgttgtggtccctgaataagaacttcacttttgctgcaacacttgagtataataaattaatttattgtcaaaagatt |
119 |
Q |
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| T |
39246834 |
gaaggcaatccatcgtgcaagattgttgtggtccctgaataagaacttcacttttgctgcaacacttgagtataataaattaatttattgtcaaaatatt |
39246735 |
T |
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| Q |
120 |
tttacaaattctttatctgtaagctaattttcttatatttcgttgttattaagtcaaatgatattctcatttcataaacattgaagaataaactaa |
215 |
Q |
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| T |
39246734 |
tttacaaattctttatctgtaagctaattttcttatatttcgttgttattaagtcaaatgatattctcatttcataaacattgaagaataaactaa |
39246639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 39933921 - 39933821
Alignment:
| Q |
98 |
attaatttattgtcaaaagatttttacaaattctttatctgtaagctaattttcttatatttcgttgttattaagtcaaatgatattctcatttcataaa |
197 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||| | |
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| T |
39933921 |
attaatttattgtcaaaagatttttacacattatttatctgtaa--aaaaattcttatattttaaatttattaagtcaaataatattctcatttcataga |
39933824 |
T |
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| Q |
198 |
cat |
200 |
Q |
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||| |
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| T |
39933823 |
cat |
39933821 |
T |
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