View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_4 (Length: 587)
Name: NF13880_low_4
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 563
Target Start/End: Original strand, 43950323 - 43950875
Alignment:
| Q |
12 |
catcatcattgttttaataaattggacccccaaatatatagacttcttcgatcatatctctaattgatgtggaatctcaacacaccctttcacgtcgaaa |
111 |
Q |
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| T |
43950323 |
catcatcattgttttaataaattggacccccaaatatatagacttcttcgatcatatctctaattgatgtggaatctcaacacaccctttcatgtcgaaa |
43950422 |
T |
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| Q |
112 |
actggatcactagaacgtgatcaaacgcaggtagcccaatcacaacacatatgtctaggactagacatctcgagtgtggacaaattcatgtgaccatatg |
211 |
Q |
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| T |
43950423 |
actggatcactagaacgtgatcaaacgcaggtagcccaatcacaacacatatgtctaggactaaacatctcgagtgtggacaaattcatgtgaccatatg |
43950522 |
T |
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| Q |
212 |
acagatctaggataagttccaatactatcttagaattctggctaggtcttgctcagcctgtagctcaagatgtgagggttgcccaagccttatgttagaa |
311 |
Q |
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| T |
43950523 |
acagatctaggataagttccaatactatcttagaattctggctaggtcttgctcagcccgtagctcaagatgtgagggttgcccaagccttatgttagaa |
43950622 |
T |
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| Q |
312 |
tcagattacgtagtatgcaggaagaggatggatatgaatattgcagtatcaattgaaagtctgcggtattgtgggatctcagcaatatgcaatagaagtt |
411 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43950623 |
tcagattacgtagtatgcaggaagagaatagatatgaatattgcagtatcaattgaaagtctgcggtattgtgggatctcagcaatatgcaatagaagtt |
43950722 |
T |
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| Q |
412 |
gtatcttgataa-ttttttagcagtagtagaattcttctagaagataatttgattcagatgatggtcagtcttctagttttcattcccatgaaataggtt |
510 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43950723 |
gtatcttgataatttttttagcagtagtagaattcttctagaagataatttgattcagatgatggtcagtcttctagttttcattcccataaaataggtt |
43950822 |
T |
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| Q |
511 |
aagtgcctcaaagttaacgcggttacgcgggacttggggtggcttgaaatatg |
563 |
Q |
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| T |
43950823 |
aagtgcctcaaagttaacgcggttacgcgggacttggggtggcttgaaatatg |
43950875 |
T |
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