View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13880_low_6 (Length: 574)

Name: NF13880_low_6
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13880_low_6
NF13880_low_6
[»] chr3 (2 HSPs)
chr3 (409-555)||(16884273-16884419)
chr3 (255-327)||(30169936-30170008)
[»] chr2 (4 HSPs)
chr2 (435-547)||(5081844-5081957)
chr2 (470-547)||(5100065-5100142)
chr2 (419-545)||(5117572-5117699)
chr2 (283-324)||(29977394-29977435)
[»] chr6 (2 HSPs)
chr6 (470-547)||(14414149-14414226)
chr6 (243-323)||(19660363-19660443)
[»] chr4 (5 HSPs)
chr4 (11-82)||(42729016-42729087)
chr4 (278-319)||(50158195-50158236)
chr4 (279-319)||(13668215-13668255)
chr4 (279-319)||(13681072-13681112)
chr4 (186-226)||(42728881-42728921)
[»] chr8 (2 HSPs)
chr8 (255-313)||(367207-367265)
chr8 (277-327)||(17871236-17871286)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 409 - 555
Target Start/End: Original strand, 16884273 - 16884419
Alignment:
Q  409 atgttgcggaatcatatacttgtggttttgcttatttgttgtttctcatgatgtgttcttataggtttgatacctatggagattggcaatctcaatcaaa 508  Q
    |||||||  |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16884273 atgttgcttaatcatatacctgtgggtttgtttatttgttgtttctcatgatgtgttcttataggtttgatacctatggagattggcaatctcaatcaaa 16884372  T
Q  509 ttcaggttctacaaatgggaaataacagcttgagtggacatgttcct 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16884373 ttcaggttctacaaatgggaaataacagcttgagtggacatgttcct 16884419  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 30170008 - 30169936
Alignment:
Q  255 tgcaaagagtatcatactttggagagatatgttaatgtgttaagtatgagttaaagttccacattgaatgtaa 327  Q
    |||| ||||||||| ||||  | ||||||||||||| ||| |||| ||||||||||||| |  ||||||||||    
T  30170008 tgcagagagtatcacacttaagggagatatgttaatatgtcaagtgtgagttaaagttctaacttgaatgtaa 30169936  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 435 - 547
Target Start/End: Complemental strand, 5081957 - 5081844
Alignment:
Q  435 tttgcttatttgttgtttctca-tgatgtgttcttataggtttgatacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataa 533  Q
    |||| ||||||||||||||||| |||| |||  || |||||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  5081957 tttgtttatttgttgtttctcaatgatatgtgattttaggttcgataccaatggagattggcagtctcaatcaacttcagcttctacaaatgggaaataa 5081858  T
Q  534 cagcttgagtggac 547  Q
    ||||||||| ||||    
T  5081857 cagcttgagcggac 5081844  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 5100065 - 5100142
Alignment:
Q  470 taggtttgatacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggac 547  Q
    |||||| |||||| |||||||||||| |||||| |||| ||||  |||||| ||||||||||||||||||||||||||    
T  5100065 taggttcgataccaatggagattggccatctcagtcaacttcaacttctactaatgggaaataacagcttgagtggac 5100142  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 545
Target Start/End: Original strand, 5117572 - 5117699
Alignment:
Q  419 atcatatacttgtggttttgcttatttgttgtttctc-atgatgtgttcttataggtttgatacctatggagattggcaatctcaatcaaattcaggttc 517  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||| |||  |  ||||||  ||||| | |||||||||| ||||||||||| ||||| |||    
T  5117572 atcatatacatgtggttttgtttatttgttttttctctatgatatgtgatgttaggttcaataccaaaggagattggccatctcaatcaacttcagcttc 5117671  T
Q  518 tacaaatgggaaataacagcttgagtgg 545  Q
    ||   |||  ||||||||||||||||||    
T  5117672 tatttatgaaaaataacagcttgagtgg 5117699  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 29977435 - 29977394
Alignment:
Q  283 atgttaatgtgttaagtatgagttaaagttccacattgaatg 324  Q
    |||||||||||| |||| | ||||||||||||||||||||||    
T  29977435 atgttaatgtgtcaagtgtaagttaaagttccacattgaatg 29977394  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 14414226 - 14414149
Alignment:
Q  470 taggtttgatacctatggagattggcaatctcaatcaaattcaggttctacaaatgggaaataacagcttgagtggac 547  Q
    |||||| | |||| |||||||||||| ||||||||||| ||||| ||||||||||| | ||||||| |||||||||||    
T  14414226 taggttcgttaccaatggagattggccatctcaatcaacttcagattctacaaatgtggaataacaacttgagtggac 14414149  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 19660443 - 19660363
Alignment:
Q  243 gtagatcttggatgcaaagagtatcatactttggagagatatgttaatgtgttaagtatgagttaaagttccacattgaat 323  Q
    |||||||  ||||||||||||| ||||||||  ||||   ||| || |||||||||| |||||||||||||| ||||||||    
T  19660443 gtagatcacggatgcaaagagtctcatacttaagagatggatgatagtgtgttaagtgtgagttaaagttcctcattgaat 19660363  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 42729087 - 42729016
Alignment:
Q  11 ccaagaatatccaactccttcaacaaattgaatccataaaattaccagcaaatcactccatccctcctactc 82  Q
    |||| ||| ||||| | |||||||||||| |||||||||||||| |||||| |||||| || ||||||||||    
T  42729087 ccaataatctccaatttcttcaacaaattaaatccataaaattatcagcaactcactctattcctcctactc 42729016  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 50158195 - 50158236
Alignment:
Q  278 gagatatgttaatgtgttaagtatgagttaaagttccacatt 319  Q
    |||| |||||||||||| ||||||||||||||||| ||||||    
T  50158195 gagagatgttaatgtgtcaagtatgagttaaagtttcacatt 50158236  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 13668255 - 13668215
Alignment:
Q  279 agatatgttaatgtgttaagtatgagttaaagttccacatt 319  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  13668255 agatatgttaatgtgtcaattatgatttaaagttccacatt 13668215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 13681112 - 13681072
Alignment:
Q  279 agatatgttaatgtgttaagtatgagttaaagttccacatt 319  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  13681112 agatatgttaatgtgtcaattatgatttaaagttccacatt 13681072  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 42728921 - 42728881
Alignment:
Q  186 ctcgtgaaagaaatgaacaaaaatattgctctatgaaacca 226  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  42728921 ctcgtgaaagaaaggaacaaaaatatcactctatgaaacca 42728881  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 367207 - 367265
Alignment:
Q  255 tgcaaagagtatcatactttggagagatatgttaatgtgttaagtatgagttaaagttc 313  Q
    |||||||||||||| ||||  | ||||||||||||| ||| |||| |||||||||||||    
T  367207 tgcaaagagtatcacacttaagggagatatgttaatatgtcaagtgtgagttaaagttc 367265  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 17871236 - 17871286
Alignment:
Q  277 agagatatgttaatgtgttaagtatgagttaaagttccacattgaatgtaa 327  Q
    ||||||| |||||||||| |||| ||||||||||||  |||||||||||||    
T  17871236 agagataggttaatgtgtcaagtgtgagttaaagttttacattgaatgtaa 17871286  T

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