View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_7 (Length: 515)
Name: NF13880_low_7
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_7 |
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| [»] scaffold1366 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Original strand, 31213609 - 31214084
Alignment:
| Q |
15 |
acatatttcagttatgcctacttctcgctttcagtgctgcatcaacccactaattggaagacaatgccaatcaatagggggatggtaatggatatccaaa |
114 |
Q |
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| T |
31213609 |
acatatttcagttatgcctacttctcgctttcagtgctgcatcaacccactaattggaagacaatgccaatcaatagggggatggtaatggaaatccaaa |
31213708 |
T |
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| Q |
115 |
taagttggtcaagtaaaaggaactcccatagtgtgaatcccattggagtaagggatgagaccgtgttaatttcacggttctctccctcctcacaattaga |
214 |
Q |
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| T |
31213709 |
taagttggtcaagtaaaaggaactcccatagtgtgaatcccattggagtaagggatgagaccgtgtcaatttcacggttctctccctcctcacaattaga |
31213808 |
T |
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| Q |
215 |
atgactctaccttcccagacactttggaacggtcctagaaaggagttgatgtctgaggaccggtcctctctctcagtcttgtggggttgaaaccccttct |
314 |
Q |
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| T |
31213809 |
atgactctaccttcccagacactttggaacggtcctagaaaggagttgatgtctgaggaacggtcctctctct--gtcttgtggggttgaaaccccttct |
31213906 |
T |
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| Q |
315 |
tctcatatcctcattgtgattataagtttgtggggttgtactggaaaactgcaaattgttaaaaattataataagtttatgtaactaaatagaacactcc |
414 |
Q |
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| T |
31213907 |
tctcatatcctcattgtgattataagtttgtggggttgtactggaaaactgcaaattgttaaaaattataataa-tttatgtaactaaatagaacactcc |
31214005 |
T |
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| Q |
415 |
-----tttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattatcacggtgtgtt |
488 |
Q |
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| T |
31214006 |
tttaatttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattatcatggtgtgtt |
31214084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 31201329 - 31201545
Alignment:
| Q |
281 |
tctctctcagtcttgtggggttgaaaccccttcttctcatatcctcattgtgattataagtttgtgg----------ggttgtactggaaaactgcaaat |
370 |
Q |
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| T |
31201329 |
tctctctgattcttgtggggttgtagccccttcttctcatgtcctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaat |
31201428 |
T |
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| Q |
371 |
tgtt-aaaaattataataagtttatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagat |
469 |
Q |
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| T |
31201429 |
tgttcaaaaattataataagttcatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaactatattactac--aaaaaaaccaagat |
31201526 |
T |
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| Q |
470 |
ctcattatcacggtgtgtt |
488 |
Q |
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| T |
31201527 |
ctcattatcatggtgtgtt |
31201545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 289 - 488
Target Start/End: Original strand, 13605464 - 13605671
Alignment:
| Q |
289 |
agtcttgtggggttgaaaccccttcttctcatatcctcattgtgattataagtttgtgg----------ggttgtactggaaaactgcaaattgtt-aaa |
377 |
Q |
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| T |
13605464 |
agtcttgtggggttgaaagcccttcttctcatgttctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaattattcaaa |
13605563 |
T |
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| Q |
378 |
aattataataagtttatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctcattat |
477 |
Q |
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| T |
13605564 |
aattataataagttcatgtaattaaatagaacgctcctttgctgaaaaacaatatttggaggaacgatat---tactataaaaaatcgagatctcattat |
13605660 |
T |
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| Q |
478 |
cacggtgtgtt |
488 |
Q |
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| T |
13605661 |
catggtgtgtt |
13605671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1366 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1366
Description:
Target: scaffold1366; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 1711 - 1649
Alignment:
| Q |
113 |
aataagttggtcaagtaaaaggaactcccatagtgtgaatcccattggagtaagggatgagac |
175 |
Q |
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| T |
1711 |
aataagctggtcaagtagaaggaactcccagagtgtgaagccccttggagtaggagatgagac |
1649 |
T |
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