View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_8 (Length: 491)
Name: NF13880_low_8
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 13409733 - 13409259
Alignment:
| Q |
18 |
gaaaatttgtagaaacaatagttttctgtcaaaacattttgtactagtaataataaatgaaacacagacacggacacaagagataataatgtatacgaac |
117 |
Q |
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| T |
13409733 |
gaaaatttgtagaaacaatagttttctgtcaaaacattttgtactagtaataataaatgaaacacagacacggacacaagagataataata-atagtaac |
13409635 |
T |
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| Q |
118 |
acgtcaatttcgataataatttgaaaaaatgaattaatagaacttagttacacgtgttggtgttgtgactcagaggcaaacacgagacatacttttgatt |
217 |
Q |
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| T |
13409634 |
acatcaatatcgataataatttgaaaaaataaattaatagaacttagttacacgtgttggtgttg--actcagaggcaaacacaagacatacttttgatt |
13409537 |
T |
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| Q |
218 |
agaagtgtcggtgctaacgacggtctaatggttatgcatggaggactatgatcttgcaacattat---tgtattatgagtagcttaataaaaaagac--a |
312 |
Q |
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| T |
13409536 |
agaagtgtcggtgcttacgacggtctaatggttatgcatggaggactatgatcttgcaacattattcatgtattatgagtagcttaataaaaaagacaaa |
13409437 |
T |
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| Q |
313 |
agtaaaattcaaa------atgattattaaattgtatgttgagtttaatatagaacaattgatttagtttgttttgatttagttagtatggaaagataag |
406 |
Q |
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| T |
13409436 |
agtaaaattcaaaataattattattattaaattgtatgttgagtttaatatagaacaattgatttagtttgttttgatttagttagtatggaaagataag |
13409337 |
T |
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| Q |
407 |
gtattgaattatgacaaaatgtttagattgaag-nnnnnnntgtgaaaaatgaagtatgttttatgcatgcagtataa |
483 |
Q |
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| T |
13409336 |
gtattgaattatgacaaaatgtttagattgaagaaaaaaaatgtgaaaaatgaagtatgttttatgcatgcagtataa |
13409259 |
T |
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