View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13880_low_9 (Length: 475)
Name: NF13880_low_9
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 30935012 - 30935453
Alignment:
| Q |
16 |
atacttcaacattttcaactcattatccaaagattcaatctaaaggggattagaaacccacgtacactgtcatgtcattattcaacatcacacatcacca |
115 |
Q |
| |
|
||||||| |||||||||| ||||| || ||||||||||| | || |||||| |||||||||||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
30935012 |
atacttccacattttcaattcattctcaaaagattcaatgtgaacgggatttgaaacccacgtacactgtcatgtcatcgtttaacatcgcacatcacca |
30935111 |
T |
|
| Q |
116 |
tagataacgtttgaagttaacggatagatgaaactgaataacgcaaaataaacccaacgtctattgtgatctttcaaaaaattcaaagactaaatagaac |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
30935112 |
taaataacgtttgaagttaacggatagatgaaaccaaataacgcaaaataaacccaaagtctactgtgatcttacgaaaaattcaaagactaaattgaac |
30935211 |
T |
|
| Q |
216 |
gatagttacaaattcagagattatctcgtctgttcattcattcattttttcaggtgaaagacttcttaccataatatatagtggcagagcttttcttttc |
315 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30935212 |
gatatttacaaattcagagactatcttgtctattcattcatt--ttttttcaggtaaaagaccgcttaccataatatatagtggcagagcctttcttttc |
30935309 |
T |
|
| Q |
316 |
aagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaatttattctgctttggaaatatgtcagaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30935310 |
aagaatgtgagcttcatcaaaataatttgtggctttcctaagtagctcataggggaagatttgccacttcaatttattctgctttggaaatatgtcagaa |
30935409 |
T |
|
| Q |
416 |
gtgctagtgaagcagcaacacatacagagatcccaccccattgc |
459 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30935410 |
gtgctagtgaagcagcagcacatacagagatcccaccccattgc |
30935453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 204 - 457
Target Start/End: Original strand, 30994106 - 30994360
Alignment:
| Q |
204 |
actaaatagaacgatagttacaaattcagagattatctcgtctgttcattcattcattttt-tcaggtgaaagacttcttaccataatatatagtggcag |
302 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| || | ||| |||| ||| ||||| |||||| ||| |||||||||||||||||| ||||| | |
|
|
| T |
30994106 |
actaaattgaacgatagttacaaactcagagactaaattttctattcactcaaagttttttatcaggtaaaacacttcttaccataatatacagtgggcg |
30994205 |
T |
|
| Q |
303 |
agcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaatttattctgctttgg |
402 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
30994206 |
agcctttcttatcaagaatgtgagcttcatcaaaataatttgtggcttttctaagttgctcatatgggaagatttgccaattcaatttactctgctttgg |
30994305 |
T |
|
| Q |
403 |
aaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
457 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30994306 |
aaatgtttcagatgtgctagtgaagcagcaacacatacagatatcccacctcatt |
30994360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 191 - 351
Target Start/End: Original strand, 30965348 - 30965507
Alignment:
| Q |
191 |
aaaaaattcaaagactaaatagaacgatagttacaaattcagagattatctcgtctgttcattcattcattttttcaggtgaaagacttcttaccataat |
290 |
Q |
| |
|
|||||||||| | ||||||| || | ||||||||||||||||||| || | ||| |||| ||| |||||||| || ||||||||||||||||||| |
|
|
| T |
30965348 |
aaaaaattcagaaactaaattgaccaatagttacaaattcagagactaaattttctattcactcaaat-ttttttcatgtaaaagacttcttaccataat |
30965446 |
T |
|
| Q |
291 |
atatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttt |
351 |
Q |
| |
|
||| |||||| |||| | ||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
30965447 |
atacagtggccgagcctctcttttcaagaatgtgagcttgatcaaaataatatgtggcttt |
30965507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 30993976 - 30994081
Alignment:
| Q |
44 |
aaagattcaatctaaaggggattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggataga |
143 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||| |||| ||| | |||||| ||||| ||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
30993976 |
aaagattcaatataaaggtgatttaaaacccacgtcgactgccatatgattatt-aacatttcacgtcatcatagataacgtttgaagttaacggagaga |
30994074 |
T |
|
| Q |
144 |
tgaaact |
150 |
Q |
| |
|
||||||| |
|
|
| T |
30994075 |
tgaaact |
30994081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 30965503 - 30965564
Alignment:
| Q |
396 |
gctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
457 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||| |||| |
|
|
| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagatctcacctcatt |
30965564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 30965231 - 30965336
Alignment:
| Q |
44 |
aaagattcaatctaaaggggattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggataga |
143 |
Q |
| |
|
|||| |||||| |||||| |||| |||||||||| ||| |||||| | |||| ||||| ||| ||| ||||||||||| ||||||||| |||| ||| |
|
|
| T |
30965231 |
aaaggttcaatgtaaaggtgatttaaaacccacgtcgactatcatgtgaatatt-aacattgcacgtcatcatagataacgcttgaagttatcggagaga |
30965329 |
T |
|
| Q |
144 |
tgaaact |
150 |
Q |
| |
|
||||||| |
|
|
| T |
30965330 |
tgaaact |
30965336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University