View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_high_10 (Length: 375)
Name: NF13881_high_10
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 41284294 - 41283949
Alignment:
| Q |
16 |
atggaacagaaacaattattttgaaatcattagatagtcacaactgagtgagtactcacaaaattagacacggttacttatagcagaagttggaccactt |
115 |
Q |
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| T |
41284294 |
atggaacagaagcaattattttgaaatcattagatggtgacaactgagtgagtactcacaaaattaggcacggttacttatagcagaaattggaccactt |
41284195 |
T |
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| Q |
116 |
gagaattgctttagtttcctgtagttacctatgaagcactgacacagccgaacatgacaccagtcatggtaaaaatttgaaataatcatttttcataa-- |
213 |
Q |
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| T |
41284194 |
gagaattgctttagtttcctgtagttacctatgaagcactgacacagccgaacatgacaccagtcatggtaaaaatttgaaataatcatttttcataagt |
41284095 |
T |
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| Q |
214 |
-tcggtgctacagaggtagttattacatgcatctcatacaaggagcatttctacttcacttgtttttaactacgcattttggttcccccttttatgtaaa |
312 |
Q |
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| T |
41284094 |
gtcggtgctacagaggtagttattacatgcatctcatacaaggagcatttctacttcacttgtttttaactatgcattttggttcccccttttatgtaaa |
41283995 |
T |
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| Q |
313 |
tgaaagatgttttcaagtttgaaggcaatgcttataaaacattatt |
358 |
Q |
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| T |
41283994 |
tgaaagatgttttcaagtttgaaggcaatgcttataaaacattatt |
41283949 |
T |
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