View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13881_high_3 (Length: 528)

Name: NF13881_high_3
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13881_high_3
NF13881_high_3
[»] chr2 (48 HSPs)
chr2 (22-512)||(11914665-11915147)
chr2 (22-83)||(35791063-35791124)
chr2 (33-67)||(31989568-31989602)
chr2 (32-69)||(7318323-7318360)
chr2 (26-83)||(16590516-16590573)
chr2 (22-67)||(38127847-38127891)
chr2 (35-83)||(11478056-11478104)
chr2 (34-70)||(11915235-11915271)
chr2 (25-69)||(33315224-33315267)
chr2 (23-67)||(39373078-39373121)
chr2 (32-67)||(15543799-15543834)
chr2 (32-67)||(16139055-16139090)
chr2 (32-67)||(16204393-16204428)
chr2 (32-67)||(18756435-18756470)
chr2 (22-69)||(19272744-19272790)
chr2 (32-67)||(19272918-19272953)
chr2 (32-67)||(38128017-38128052)
chr2 (32-66)||(776360-776394)
chr2 (25-67)||(7318176-7318217)
chr2 (25-67)||(15580617-15580659)
chr2 (25-67)||(25103985-25104026)
chr2 (33-67)||(31377764-31377798)
chr2 (32-66)||(33218410-33218444)
chr2 (25-67)||(33218575-33218616)
chr2 (33-67)||(39751945-39751979)
chr2 (33-83)||(42223271-42223321)
chr2 (22-67)||(1975729-1975773)
chr2 (22-67)||(7008020-7008064)
chr2 (32-69)||(16260769-16260806)
chr2 (34-67)||(16590663-16590696)
chr2 (22-67)||(18048901-18048945)
chr2 (22-67)||(18756596-18756640)
chr2 (22-63)||(19253488-19253528)
chr2 (26-67)||(29878930-29878971)
chr2 (22-67)||(29949640-29949684)
chr2 (34-67)||(30497407-30497440)
chr2 (34-67)||(31397475-31397508)
chr2 (22-67)||(34831576-34831620)
chr2 (22-67)||(36525360-36525404)
chr2 (32-69)||(38950111-38950148)
chr2 (122-155)||(41905989-41906022)
chr2 (22-83)||(41906059-41906119)
chr2 (22-83)||(42223093-42223153)
chr2 (22-67)||(42794096-42794140)
chr2 (22-67)||(43830749-43830793)
chr2 (24-72)||(13315927-13315975)
chr2 (35-67)||(18155450-18155482)
chr2 (25-69)||(41100775-41100818)
[»] chr1 (17 HSPs)
chr1 (22-83)||(33864119-33864180)
chr1 (22-83)||(33916742-33916803)
chr1 (23-83)||(44228343-44228403)
chr1 (33-83)||(33864267-33864317)
chr1 (33-83)||(33916605-33916655)
chr1 (34-83)||(7261534-7261583)
chr1 (22-83)||(9240535-9240596)
chr1 (33-83)||(22315214-22315264)
chr1 (22-67)||(26190815-26190859)
chr1 (32-67)||(21770979-21771014)
chr1 (32-67)||(22387228-22387263)
chr1 (32-67)||(27666172-27666207)
chr1 (22-67)||(5932046-5932090)
chr1 (22-67)||(9209659-9209703)
chr1 (32-69)||(26190986-26191023)
chr1 (22-67)||(26399103-26399147)
chr1 (22-67)||(44961090-44961134)
[»] chr6 (19 HSPs)
chr6 (25-83)||(3816694-3816752)
chr6 (33-83)||(33198592-33198642)
chr6 (22-67)||(12292947-12292991)
chr6 (26-67)||(18592095-18592135)
chr6 (32-67)||(1227932-1227967)
chr6 (32-67)||(2270740-2270775)
chr6 (34-69)||(9676304-9676339)
chr6 (32-67)||(16119916-16119951)
chr6 (32-67)||(21544386-21544421)
chr6 (25-67)||(13729186-13729227)
chr6 (22-67)||(32603731-32603774)
chr6 (29-83)||(33200009-33200063)
chr6 (26-67)||(7322011-7322051)
chr6 (22-67)||(9222574-9222618)
chr6 (22-67)||(9234929-9234973)
chr6 (32-69)||(12293117-12293154)
chr6 (22-67)||(17158360-17158404)
chr6 (22-67)||(32216987-32217031)
chr6 (35-67)||(22495785-22495817)
[»] chr8 (30 HSPs)
chr8 (34-83)||(13980023-13980072)
chr8 (22-83)||(31343806-31343867)
chr8 (22-66)||(28786507-28786551)
chr8 (22-67)||(2873533-2873577)
chr8 (22-67)||(29346089-29346133)
chr8 (22-67)||(32684809-32684853)
chr8 (22-67)||(37545138-37545182)
chr8 (32-67)||(11830431-11830466)
chr8 (32-67)||(12478829-12478864)
chr8 (32-67)||(13558797-13558832)
chr8 (34-69)||(23389278-23389313)
chr8 (32-67)||(32684646-32684681)
chr8 (32-67)||(34845368-34845403)
chr8 (32-67)||(41509464-41509499)
chr8 (33-83)||(9235533-9235583)
chr8 (33-83)||(11908469-11908519)
chr8 (32-66)||(35839609-35839643)
chr8 (21-67)||(38711868-38711913)
chr8 (22-67)||(5566730-5566774)
chr8 (34-67)||(8980767-8980800)
chr8 (22-67)||(9235371-9235415)
chr8 (22-67)||(9305653-9305697)
chr8 (34-67)||(9662278-9662311)
chr8 (22-67)||(23389103-23389147)
chr8 (26-67)||(24331579-24331619)
chr8 (46-83)||(27703007-27703044)
chr8 (22-67)||(30872642-30872686)
chr8 (22-67)||(34227411-34227455)
chr8 (22-67)||(38703844-38703888)
chr8 (26-67)||(41509632-41509672)
[»] chr7 (32 HSPs)
chr7 (22-83)||(1853170-1853230)
chr7 (23-83)||(27082734-27082794)
chr7 (23-83)||(27195507-27195567)
chr7 (25-83)||(15011868-15011926)
chr7 (22-67)||(2936326-2936371)
chr7 (22-67)||(5864692-5864736)
chr7 (22-67)||(13263953-13263997)
chr7 (22-67)||(26254804-26254848)
chr7 (22-66)||(17155693-17155736)
chr7 (23-67)||(30632082-30632125)
chr7 (33-69)||(34436872-34436908)
chr7 (116-156)||(43393708-43393748)
chr7 (28-83)||(15635155-15635209)
chr7 (32-67)||(35158438-35158473)
chr7 (33-83)||(1853344-1853394)
chr7 (25-67)||(3401886-3401927)
chr7 (25-83)||(15331619-15331677)
chr7 (33-67)||(21022474-21022508)
chr7 (25-67)||(21022608-21022649)
chr7 (32-66)||(21443951-21443985)
chr7 (25-83)||(45687831-45687889)
chr7 (22-67)||(2300906-2300950)
chr7 (22-83)||(3092463-3092523)
chr7 (26-83)||(10931960-10932016)
chr7 (22-67)||(11576817-11576861)
chr7 (22-67)||(17051900-17051945)
chr7 (22-67)||(20055067-20055111)
chr7 (38-83)||(24812983-24813028)
chr7 (22-67)||(31307935-31307979)
chr7 (26-67)||(36374230-36374270)
chr7 (22-67)||(43707173-43707217)
chr7 (33-69)||(22859340-22859376)
[»] chr4 (37 HSPs)
chr4 (22-67)||(9780534-9780579)
chr4 (24-83)||(16734148-16734207)
chr4 (22-69)||(50719672-50719718)
chr4 (22-67)||(3652355-3652399)
chr4 (22-67)||(30919002-30919046)
chr4 (34-83)||(49533279-49533328)
chr4 (25-65)||(16876067-16876107)
chr4 (25-81)||(31031611-31031667)
chr4 (32-67)||(3652527-3652562)
chr4 (32-67)||(5514440-5514475)
chr4 (32-67)||(29104417-29104452)
chr4 (32-67)||(36395419-36395454)
chr4 (32-67)||(49166900-49166935)
chr4 (22-67)||(2032662-2032708)
chr4 (33-83)||(9780396-9780446)
chr4 (25-67)||(17696314-17696355)
chr4 (37-83)||(21744798-21744844)
chr4 (25-67)||(26040756-26040798)
chr4 (102-156)||(31031700-31031754)
chr4 (25-67)||(39133169-39133210)
chr4 (33-83)||(49277731-49277781)
chr4 (25-83)||(49277870-49277928)
chr4 (25-67)||(50773373-50773414)
chr4 (22-67)||(7913359-7913403)
chr4 (22-67)||(18165136-18165180)
chr4 (22-67)||(21507910-21507954)
chr4 (22-67)||(22854048-22854092)
chr4 (22-67)||(25244606-25244650)
chr4 (38-83)||(25786235-25786280)
chr4 (22-67)||(29104244-29104289)
chr4 (22-83)||(29700567-29700628)
chr4 (27-72)||(31226433-31226477)
chr4 (22-67)||(32682418-32682462)
chr4 (22-67)||(42056063-42056107)
chr4 (32-65)||(50719847-50719880)
chr4 (23-67)||(5514603-5514646)
chr4 (37-81)||(29172756-29172800)
[»] chr3 (27 HSPs)
chr3 (34-83)||(5303697-5303746)
chr3 (22-83)||(17030597-17030657)
chr3 (45-83)||(21113005-21113043)
chr3 (22-72)||(25125003-25125052)
chr3 (33-83)||(55257708-55257758)
chr3 (22-67)||(13041610-13041654)
chr3 (22-67)||(13049687-13049731)
chr3 (22-67)||(19111187-19111231)
chr3 (22-83)||(25158857-25158917)
chr3 (22-67)||(52839546-52839590)
chr3 (32-67)||(300423-300458)
chr3 (32-67)||(13041447-13041482)
chr3 (32-67)||(13049524-13049559)
chr3 (24-67)||(22817966-22818008)
chr3 (32-67)||(52839383-52839418)
chr3 (26-67)||(7013373-7013414)
chr3 (26-67)||(13439815-13439855)
chr3 (22-67)||(18359438-18359483)
chr3 (22-67)||(28735527-28735571)
chr3 (34-67)||(30226316-30226349)
chr3 (26-67)||(31073908-31073948)
chr3 (22-67)||(31293699-31293743)
chr3 (122-155)||(43426211-43426244)
chr3 (22-67)||(52962315-52962359)
chr3 (33-81)||(7308254-7308302)
chr3 (34-66)||(14004316-14004348)
chr3 (35-83)||(43426453-43426501)
[»] chr5 (32 HSPs)
chr5 (24-79)||(18232008-18232063)
chr5 (33-83)||(21144027-21144077)
chr5 (22-67)||(4414011-4414055)
chr5 (22-67)||(11721350-11721394)
chr5 (32-67)||(11721522-11721557)
chr5 (32-67)||(23159690-23159725)
chr5 (32-67)||(38874422-38874457)
chr5 (32-67)||(41123228-41123263)
chr5 (22-68)||(13153739-13153784)
chr5 (25-67)||(25233876-25233917)
chr5 (25-67)||(25298036-25298077)
chr5 (33-67)||(25919814-25919848)
chr5 (25-67)||(26243185-26243226)
chr5 (32-66)||(26243356-26243390)
chr5 (32-66)||(37217391-37217425)
chr5 (22-79)||(6527415-6527472)
chr5 (32-69)||(7577837-7577874)
chr5 (22-67)||(8855482-8855526)
chr5 (22-67)||(12148155-12148199)
chr5 (22-67)||(20355099-20355143)
chr5 (26-67)||(22756315-22756355)
chr5 (26-67)||(25962886-25962926)
chr5 (34-67)||(29691216-29691249)
chr5 (22-67)||(31312700-31312744)
chr5 (22-67)||(31567717-31567761)
chr5 (34-67)||(31567847-31567880)
chr5 (22-67)||(31920144-31920188)
chr5 (34-67)||(37869557-37869590)
chr5 (34-67)||(38083061-38083094)
chr5 (22-67)||(41123391-41123435)
chr5 (35-67)||(12147993-12148025)
chr5 (25-69)||(23159549-23159592)
[»] scaffold0003 (1 HSPs)
scaffold0003 (33-67)||(306723-306757)
[»] scaffold0004 (1 HSPs)
scaffold0004 (22-67)||(212597-212641)
[»] scaffold0002 (2 HSPs)
scaffold0002 (22-67)||(332148-332192)
scaffold0002 (32-67)||(432480-432515)
[»] scaffold0022 (1 HSPs)
scaffold0022 (32-67)||(63116-63151)
[»] scaffold1462 (1 HSPs)
scaffold1462 (33-67)||(336-370)
[»] scaffold0258 (1 HSPs)
scaffold0258 (22-64)||(18847-18888)
[»] scaffold0154 (1 HSPs)
scaffold0154 (22-67)||(9305-9349)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 22 - 512
Target Start/End: Complemental strand, 11915147 - 11914665
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaannnnnnnnnnnnnnnataagggataaaccaaaaaattt 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||               | || ||||||||| |||| |||    
T  11915147 acagtcaaaatctatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaattttttttt------acaaaggataaaccgaaaa-ttt 11915055  T
Q  122 ctaatattatagggggtaaacatgtattaaccctacaatcattaagggagatctttggatcattaggaatgtttcactaaaggtatacacatagaacaag 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11915054 ctaatattatagagggtaaacatgtattaaccctacaatcattaagggagatctttggatcattaggaatgtttcactaaaggtatacacatagaacaag 11914955  T
Q  222 tttgtcaacattcaagacctagatttcattcacatttctttatggattcaaatctgggaacatcacatacattgcaaaaccatcacaatggggcatcaat 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11914954 tttgtcaacattcaagacctggatttcattcacatttctttatggattcaaatctgggaacatcacatacattgcaaaaccatcacaatggggcatcaat 11914855  T
Q  322 tgggttcacagattgggaaagttatgtatgatgttgtttattaataccgtgataataccttattgtaaagtttaaggttataattcccttgttcctaact 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  11914854 tgggttcacagattgggaaagttatgtatgatgttgtttattaataccgtgataataccttattgtaaagtttaaggttataattcccttg-tcccaact 11914756  T
Q  422 tattaaggcatgtatgtatattgggaatgaaactgatggccttcactaacttgattttaggtatgaaaatttccatatttttgtttctcct 512  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11914755 tattaaggcatgtatgtatattgggaatgaaactgatggcattcactaacttgattttaggtatgaaaatttccatatttttgtttctcct 11914665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 35791124 - 35791063
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| ||||||||||||||| || ||||| ||||||||| |||||| ||||||||    
T  35791124 acagtcaaaattcatgaaggtccaaaaacagagaatattcaaattacagggttggaatctaa 35791063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31989568 - 31989602
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||||||||||||||||    
T  31989568 ccatgaaggtccaaaaccaaagaatcttcaaatta 31989602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 7318323 - 7318360
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7318323 tccatgaaggtccaaaaccaaaaaatcttcaaattata 7318360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 16590573 - 16590516
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||| ||||||||| |||||||||| ||||||||||||| || ||| ||||||||    
T  16590573 tcaaaattcatgaaggtgcaaaaccaaaaaatcttcaaattacagagttggaatctaa 16590516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 38127891 - 38127847
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  38127891 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 38127847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 11478104 - 11478056
Alignment:
Q  35 atgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||||||||||||||| ||||||||| ||||||  |||||||    
T  11478104 atgaaggtccaaaaccaaagaattttcaaattacagggttgaaatctaa 11478056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 11915235 - 11915271
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattatag 70  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11915235 catgaaggtccaaaaccaaaaaatcttcaaattatag 11915271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 33315267 - 33315224
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  33315267 gtcaaaatccatgaaggtccaaaaccata-aatcttcaaattata 33315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 39373121 - 39373078
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  39373121 cagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 39373078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 15543834 - 15543799
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  15543834 tccatgaaggtccaaaaccaaaaaatcttcaaatta 15543799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 16139055 - 16139090
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  16139055 tccatgaaggtccaaaaccaaaaaatcttcaaatta 16139090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 16204428 - 16204393
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  16204428 tccatgaaggtccaaaaccaaaaaatcttcaaatta 16204393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 18756470 - 18756435
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  18756470 tccatgaaggtccaaaaccaaaaaatcttcaaatta 18756435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 19272790 - 19272744
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  19272790 acagtcaaaattcatgaaggtctaaaaccaaa-aatcttcaaattata 19272744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 19272918 - 19272953
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  19272918 tccatgaaggtccaaaaccaaaaaatcttcaaatta 19272953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 38128017 - 38128052
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  38128017 tccatgaaggtccaaaaccaaaaaatcttcaaatta 38128052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 776394 - 776360
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  776394 tccatgaaggtccaaaaccaaaaaatcttcaaatt 776360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 7318217 - 7318176
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  7318217 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 7318176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 15580617 - 15580659
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  15580617 gtcaaaattcatgaaggtccaaaatcaaaaaatcttcaaatta 15580659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 25103985 - 25104026
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  25103985 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 25104026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31377764 - 31377798
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  31377764 ccatgaaggtccaaaaccaaataatcttcaaatta 31377798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 33218444 - 33218410
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  33218444 tccatgaaggtccaaaaccaaaaaatcttcaaatt 33218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 33218575 - 33218616
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  33218575 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 33218616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 39751979 - 39751945
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  39751979 ccatgaaggtccaaaaccaaaaaatcttcaaatta 39751945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 42223271 - 42223321
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||| ||||| |||| ||||||||||||| |||||| ||||||||    
T  42223271 ccatgaaggttcaaaatcaaaaaatcttcaaattacagggttggaatctaa 42223321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 1975729 - 1975773
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  1975729 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 1975773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 7008020 - 7008064
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  7008020 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 7008064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 16260769 - 16260806
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  16260769 tccatgaaggtccaaaactaaaaaatcttcaaattata 16260806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 16590663 - 16590696
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  16590663 catgaaggtccaaaaccaaataatcttcaaatta 16590696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 18048945 - 18048901
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  18048945 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 18048901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 18756596 - 18756640
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||    
T  18756596 acagtcaaaattcatgaaggtccaaaaccaaa-aatctttaaatta 18756640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 19253528 - 19253488
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaa 63  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  19253528 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaa 19253488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 29878930 - 29878971
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| ||| |||||| |||||||||||||||||||||||    
T  29878930 tcaaaattcataaaggtctaaaaccaaagaatcttcaaatta 29878971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 29949684 - 29949640
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  29949684 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 29949640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 30497407 - 30497440
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  30497407 catgaaggtccaaaaccaaaaaatcttcaaatta 30497440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 31397475 - 31397508
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  31397475 catgaaggtccaaaaccaaataatcttcaaatta 31397508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 34831620 - 34831576
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||    
T  34831620 acagtcaaaattcatgaagggccaaaaccaaa-aatcttcaaatta 34831576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 36525404 - 36525360
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  36525404 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 36525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 38950111 - 38950148
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  38950111 tccatgaaggtccaaaacaaaaaaatcttcaaattata 38950148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 41906022 - 41905989
Alignment:
Q  122 ctaatattatagggggtaaacatgtattaaccct 155  Q
    ||||||||| ||||||||||||||||||||||||    
T  41906022 ctaatattacagggggtaaacatgtattaaccct 41905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 41906119 - 41906059
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||| |||||| || |||||    
T  41906119 acagtcaaaattcatgaaggtcgaaaaccaaa-tatcttcaaattacagggttggattctaa 41906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 42223153 - 42223093
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| ||||||| |||||||||||| | ||||||||||| ||||||  |||||||    
T  42223153 acagtcaaaattcatgaagatccaaaaccaaa-attcttcaaattacagggttgaaatctaa 42223093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 42794140 - 42794096
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  42794140 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 42794096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 43830749 - 43830793
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  43830749 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 43830793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 13315975 - 13315927
Alignment:
Q  24 agtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattataggg 72  Q
    ||||||||| |||| |||| |||||||||| ||||||||||||| ||||    
T  13315975 agtcaaaattcatgtaggtacaaaaccaaataatcttcaaattacaggg 13315927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 18155450 - 18155482
Alignment:
Q  35 atgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||||||||| |||||    
T  18155450 atgaaggtccaaaaccaaagaatcttcgaatta 18155482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 41100818 - 41100775
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||| |||||||||||||||||| | |||||||||||||||    
T  41100818 gtcaaaattcatgaaggtccaaaaccata-aatcttcaaattata 41100775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 33864180 - 33864119
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||    
T  33864180 acagtcaaaattcatgaagattcaaaaccaaagaatcttcaaattacagggttggaatctaa 33864119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 33916742 - 33916803
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||| |||||| ||||||||    
T  33916742 acagtcaaaattcatgaagattcaaaaccaaagaatcttcaaattacagggttggaatctaa 33916803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 44228403 - 44228343
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| ||||||  |||||||    
T  44228403 cagtcaaaattcatgaaggtccaaaaccaaagaatctttaaattacagggttgtaatctaa 44228343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 33864267 - 33864317
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33864267 ccataaaggtccaaaaccaaagaatcttcaaattacagggttggaatctaa 33864317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 33916655 - 33916605
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33916655 ccataaaggtccaaaaccaaagaatcttcaaattacagggttggaatctaa 33916605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 7261534 - 7261583
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  7261534 catgaaggtccaaaaccaaagaatgttcaaattacagggttggaatctaa 7261583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 9240596 - 9240535
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||  |||||||    
T  9240596 acagtcaaaattcataaaggtccaaaatcaaagaatcttcaaattacagggttcaaatctaa 9240535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 22315264 - 22315214
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||| |||| ||||||||||||| |||||| ||||||||    
T  22315264 ccatgaaggtccaaaatcaaaaaatcttcaaattacagggttggaatctaa 22315214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 26190859 - 26190815
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  26190859 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 26190815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 21770979 - 21771014
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  21770979 tccatgaaggtccaaaaccaaaaaatcttcaaatta 21771014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 22387263 - 22387228
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  22387263 tccatgaaggtccaaaaccaaaaaatcttcaaatta 22387228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 27666172 - 27666207
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  27666172 tccatgaaggtccaaaaccaaaaaatcttcaaatta 27666207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 5932090 - 5932046
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||    
T  5932090 acagtcgaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 5932046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9209703 - 9209659
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  9209703 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 9209659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 26190986 - 26191023
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  26190986 tccatgaaggtccaaaatcaaaaaatcttcaaattata 26191023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26399103 - 26399147
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  26399103 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 26399147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 44961134 - 44961090
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||    
T  44961134 acagtcaaaatccatgaaggtccaaaa-taaaaaatcttcaaatta 44961090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 3816694 - 3816752
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||  |||||||    
T  3816694 gtcaaaacccatgaaggtcaaaaaccaaagaatcttcaaattacagggttgaaatctaa 3816752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 33198642 - 33198592
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||| ||| |||||||||||||||||||||||||||| | ||||||||    
T  33198642 ccatgaatgtctaaaaccaaagaatcttcaaattatagggatggaatctaa 33198592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 12292991 - 12292947
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  12292991 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 12292947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 18592135 - 18592095
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  18592135 tcaaaatccatgaaggtccaaaaccaaa-aatcttcaaatta 18592095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 1227932 - 1227967
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  1227932 tccatgaaggtccaaaaccaaaaaatcttcaaatta 1227967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 2270740 - 2270775
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  2270740 tccatgaaggtccaaaaccaaaaaatcttcaaatta 2270775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 9676339 - 9676304
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||||||||||||||| |||||||||||||||    
T  9676339 catgaaggtccaaaaccaaaaaatcttcaaattata 9676304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 16119916 - 16119951
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  16119916 tccatgaaggtccaaaaccaaaaaatcttcaaatta 16119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 21544386 - 21544421
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  21544386 tccatgaaggtccaaaaccaaaaaatcttcaaatta 21544421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 13729186 - 13729227
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  13729186 gtcaaaatacatgaaggtccaaaaccaaa-aatcttcaaatta 13729227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 32603731 - 32603774
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  32603731 acagtcaaaattcatgaaggtccaaaaccaa--aatcttcaaatta 32603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 33200009 - 33200063
Alignment:
Q  29 aaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||| ||| ||||||||||| |||||||||||||||||| ||||||  |||||||    
T  33200009 aaattcataaaggtccaaaatcaaagaatcttcaaattacagggttgtaatctaa 33200063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 7322011 - 7322051
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  7322011 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 7322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9222574 - 9222618
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  9222574 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 9222618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9234973 - 9234929
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  9234973 acagtcaaaatttatgaaggtccaaaaccaaa-aatcttcaaatta 9234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 12293117 - 12293154
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  12293117 tccatgaaggttcaaaaccaaaaaatcttcaaattata 12293154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 17158360 - 17158404
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||    
T  17158360 acagtcaaaattcatggaggtccaaaaccaaa-aatcttcaaatta 17158404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 32216987 - 32217031
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||    
T  32216987 acagtcaaaattcatgaaggtccaaaaccaaa-actcttcaaatta 32217031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 22495817 - 22495785
Alignment:
Q  35 atgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||| |||||||||||||    
T  22495817 atgaaggtccaaaaccaaaaaatcttcaaatta 22495785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 13980023 - 13980072
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  13980023 catgaaggtccaaaatcaaagaatcttcaaattacagggttagaatctaa 13980072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 31343806 - 31343867
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| |||||||||| ||||||||| |||||| |||||| ||||||| |||||||    
T  31343806 acagtcaaaattcatgaaggtcaaaaaccaaataatctttaaattacagggttttaatctaa 31343867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 28786507 - 28786551
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  28786507 acagtcaaaattcatgaaggtccaaaatcaaagaatcttcaaatt 28786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 2873577 - 2873533
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  2873577 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 2873533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 29346133 - 29346089
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  29346133 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 29346089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 32684809 - 32684853
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  32684809 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 32684853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 37545138 - 37545182
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  37545138 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 37545182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 11830431 - 11830466
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  11830431 tccatgaaggtccaaaaccaaaaaatcttcaaatta 11830466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 12478829 - 12478864
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  12478829 tccatgaaggtccaaaaccaaaaaatcttcaaatta 12478864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 13558797 - 13558832
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  13558797 tccatgaaggtccaaaaccaaaaaatcttcaaatta 13558832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 23389278 - 23389313
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||||||||||||||| |||||||||||||||    
T  23389278 catgaaggtccaaaaccaaaaaatcttcaaattata 23389313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 32684681 - 32684646
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  32684681 tccatgaaggtccaaaaccaaaaaatcttcaaatta 32684646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 34845403 - 34845368
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  34845403 tccatgaaggtccaaaaccaaaaaatcttcaaatta 34845368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 41509499 - 41509464
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  41509499 tccatgaaggtccaaaaccaaaaaatcttcaaatta 41509464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 9235533 - 9235583
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||| |||| ||||||||||||| ||||||  |||||||    
T  9235533 ccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgaaatctaa 9235583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 11908519 - 11908469
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||| |||||| ||||||||||||||| | |||| ||||||||    
T  11908519 ccatgaaggtcctaaaccatagaatcttcaaattacatggttggaatctaa 11908469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 35839609 - 35839643
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  35839609 tccatgaaggtccaaaaccaaaaaatcttcaaatt 35839643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 38711868 - 38711913
Alignment:
Q  21 aacagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||| |||||||||||||||||||| ||| |||||||||    
T  38711868 aacagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 38711913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 5566730 - 5566774
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||    
T  5566730 acagtcaaaattcatgaaggtccaaaaccaga-aatcttcaaatta 5566774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 8980767 - 8980800
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||| |||||||||||||||||    
T  8980767 catgaaggtccaaaactaaagaatcttcaaatta 8980800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9235415 - 9235371
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||    
T  9235415 acagtcaaaattcatgaaggtccaaaaccaaa-attcttcaaatta 9235371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9305653 - 9305697
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||    
T  9305653 acagtcaaaattcatgaaggttcaaaaccaaa-aatcttcaaatta 9305697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 9662311 - 9662278
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  9662311 catgaaggtccaaaaccaaaaaatcttcaaatta 9662278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 23389147 - 23389103
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  23389147 acagtcaaaatttatgaaggtccaaaaccaaa-aatcttcaaatta 23389103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 24331579 - 24331619
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  24331579 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 24331619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 27703007 - 27703044
Alignment:
Q  46 aaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  27703007 aaaccaaacaatcttcaaattatagagtttgaatctaa 27703044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 30872642 - 30872686
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  30872642 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 30872686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 34227455 - 34227411
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  34227455 acagtcaaaattcatgaaggtctaaaaccaaa-aatcttcaaatta 34227411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 38703844 - 38703888
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  38703844 acagtaaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 38703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 41509632 - 41509672
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  41509632 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 41509672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1853230 - 1853170
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| |||||  ||||||||    
T  1853230 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaattacagggtgggaatctaa 1853170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 27082734 - 27082794
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||| ||| |||||| ||||||||| ||||||||||||| |||||| ||||||||    
T  27082734 cagtcaaaattcataaaggtctaaaaccaaataatcttcaaattacagggttggaatctaa 27082794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 27195567 - 27195507
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||| ||| |||||| ||||||||| ||||||||||||| |||||| ||||||||    
T  27195567 cagtcaaaattcataaaggtctaaaaccaaataatcttcaaattacagggttggaatctaa 27195507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 15011926 - 15011868
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||| |||| |||| |||||||||||||||||||||||| ||||||  |||||||    
T  15011926 gtcaaaattcatgcaggttcaaaaccaaagaatcttcaaattacagggttgaaatctaa 15011868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 2936326 - 2936371
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||    
T  2936326 acagtcaaaatttatgaaggtcgaaaaccaaagaatcttcaaatta 2936371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 5864692 - 5864736
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  5864692 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 5864736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 13263997 - 13263953
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  13263997 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 13263953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26254804 - 26254848
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  26254804 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 26254848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 17155736 - 17155693
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  17155736 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatt 17155693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 30632125 - 30632082
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  30632125 cagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 30632082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 34436872 - 34436908
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34436872 ccatgaaggtccaaaaccaaaaaatcttcaaattata 34436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 43393748 - 43393708
Alignment:
Q  116 aaatttctaatattatagggggtaaacatgtattaacccta 156  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  43393748 aaattgctaatattacagggggtaaacatgtattaacccta 43393708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 15635209 - 15635155
Alignment:
Q  28 aaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||| || |||||    
T  15635209 aaaattcatgaaggtccaaaaccaaa-aatcttcaaattacagggttggattctaa 15635155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 35158438 - 35158473
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  35158438 tccatgaaggtccaaaaccaaaaaatcttcaaatta 35158473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 1853344 - 1853394
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||| |||| ||||||||||||| | |||| ||||||||    
T  1853344 ccatgaaggtccaaaatcaaaaaatcttcaaattacaaggttggaatctaa 1853394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 3401927 - 3401886
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  3401927 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 3401886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 15331619 - 15331677
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||| |||||||||  || |||||||||||||||| ||| |||||| ||||||||    
T  15331619 gtcaaaattcatgaaggtataacaccaaagaatcttcaagttacagggttggaatctaa 15331677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 21022508 - 21022474
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  21022508 ccatgaaggtccaaaaccaaaaaatcttcaaatta 21022474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 21022608 - 21022649
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  21022608 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 21022649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 21443985 - 21443951
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  21443985 tccatgaaggtccaaaaccaaaaaatcttcaaatt 21443951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 45687831 - 45687889
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||| |||||||||| ||||| ||| ||||||||||||||| ||||  |||||||    
T  45687831 gtcaaaattcatgaaggtctaaaacgaaataatcttcaaattataaggttgaaatctaa 45687889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 2300950 - 2300906
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  2300950 acagtcaaaattcatgaaggtccaaaatc-aagaatcttcaaatta 2300906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 3092463 - 3092523
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||  |||||||||||||  |||| ||||||||||||| |||||| ||||||||    
T  3092463 acagtcaaaattaatgaaggtccaaatacaaa-aatcttcaaattacagggttggaatctaa 3092523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 10932016 - 10931960
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||| |||||||||||||||||||| | ||||||||||| ||||||  |||||||    
T  10932016 tcaaaattcatgaaggtccaaaaccaaa-attcttcaaattacagggttgaaatctaa 10931960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 11576817 - 11576861
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||||    
T  11576817 acagtcaaaattcatgaaggtccaaaa-caaaaaatcttcaaatta 11576861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 17051945 - 17051900
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||| |||| ||| |||||||||    
T  17051945 acagtcaaaattcatgaaggtccaaaatcaaaaaatattcaaatta 17051900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 20055067 - 20055111
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||    
T  20055067 acagtcaaaattcatgaaagtccaaaaccaaa-aatcttcaaatta 20055111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 24812983 - 24813028
Alignment:
Q  38 aaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||| ||||||||||||||||||||||| ||||||  |||||||    
T  24812983 aaggtctaaaaccaaagaatcttcaaattacagggttgaaatctaa 24813028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 31307979 - 31307935
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||||    
T  31307979 acagtcaaaattcatgaaggtccaaaa-caaaaaatcttcaaatta 31307935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 36374270 - 36374230
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  36374270 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 36374230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 43707173 - 43707217
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||    
T  43707173 acagtcaaaattcatgaagggccaaaaccaaa-aatcttcaaatta 43707217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 22859376 - 22859340
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||| |||||||||||| |||||||||||||||    
T  22859376 ccatgaagatccaaaaccaaaaaatcttcaaattata 22859340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 9780534 - 9780579
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  9780534 acagtcaaaattcatgaaggtccaaaaccaaataatcttcaaatta 9780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 16734207 - 16734148
Alignment:
Q  24 agtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  16734207 agtcaaaattcatgaagctctaaaaccatagaatcttcaaattacagggttggaatctaa 16734148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 50719718 - 50719672
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  50719718 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaattata 50719672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 3652399 - 3652355
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  3652399 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 3652355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 30919046 - 30919002
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  30919046 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 30919002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 49533279 - 49533328
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  49533279 catgaaggtccaaaaccaaataatcttcaaattataaggttataatctaa 49533328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 16876067 - 16876107
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaat 65  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  16876067 gtcaaaattcatgaaggtctaaaaccaaagaatcttcaaat 16876107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 31031667 - 31031611
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatct 81  Q
    ||||||||  |||||||||||| |||||||||| ||||||||| |||||| ||||||    
T  31031667 gtcaaaatttatgaaggtccaacaccaaagaatattcaaattacagggttggaatct 31031611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 3652527 - 3652562
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  3652527 tccatgaaggtccaaaaccaaaaaatcttcaaatta 3652562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 5514475 - 5514440
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  5514475 tccatgaaggtccaaaaccaaaaaatcttcaaatta 5514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 29104417 - 29104452
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  29104417 tccatgaaggtccaaaaccaaaaaatcttcaaatta 29104452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 36395454 - 36395419
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  36395454 tccatgaaggtccaaaaccaaaaaatcttcaaatta 36395419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 49166900 - 49166935
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  49166900 tccatgaaggtccaaaaccaaaaaatcttcaaatta 49166935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 2032662 - 2032708
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaacc-aaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  2032662 acagtcaaaattcatgaaggtccaaaaccaaaaaaatcttcaaatta 2032708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 9780446 - 9780396
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||| ||||| |||| |||||||||||||||||| |||||| ||||||||    
T  9780446 ccatgtaggtcgaaaatcaaagaatcttcaaattacagggttggaatctaa 9780396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 17696314 - 17696355
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  17696314 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 17696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 21744844 - 21744798
Alignment:
Q  37 gaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||||||    
T  21744844 gaaggtccaaaaccaaataatctttaaattatatggttggaatctaa 21744798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 26040756 - 26040798
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||| ||| |||||||||||||    
T  26040756 gtcaaaattcatgaaggtccaaaacaaaaaaatcttcaaatta 26040798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 31031700 - 31031754
Alignment:
Q  102 agggataaaccaaaaaatttctaatattatagggggtaaacatgtattaacccta 156  Q
    ||||||||||||||| |||  |||||||| ||| ||||||||| |||||||||||    
T  31031700 agggataaaccaaaatattcttaatattacaggaggtaaacatatattaacccta 31031754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 39133210 - 39133169
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  39133210 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 39133169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 49277781 - 49277731
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||||||||||||| ||| ||||||||| | |||| ||||||||    
T  49277781 ccatgaaggtccaaaaccaaataattttcaaattacacggttggaatctaa 49277731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 49277870 - 49277928
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||  |||||||| |||||||||| ||||||||||||| | |||| ||||||||    
T  49277870 gtcaaaatttatgaaggttcaaaaccaaataatcttcaaattacaaggttggaatctaa 49277928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 50773414 - 50773373
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  50773414 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 50773373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 7913359 - 7913403
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  7913359 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 7913403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 18165136 - 18165180
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||    
T  18165136 acagtcaaaattcatgaaggtccaaaaccaga-aatcttcaaatta 18165180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 21507954 - 21507910
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  21507954 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 21507910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 22854092 - 22854048
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  22854092 acagtcaaaattcatgaaggtccaaaaccaaa-aatattcaaatta 22854048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 25244606 - 25244650
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  25244606 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 25244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 25786280 - 25786235
Alignment:
Q  38 aaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||| |||||| |||||| |||||| ||||||||    
T  25786280 aaggtccaaaaccaaataatctttaaattacagggttggaatctaa 25786235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 29104289 - 29104244
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  29104289 acagttaaaattcatgaaggtctaaaaccaaaaaatcttcaaatta 29104244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 29700628 - 29700567
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||| ||||| |||||||||| ||||  ||||||||||||||| | |||||| ||||||||    
T  29700628 acagtaaaaattcatgaaggtcaaaaattaaagaatcttcaaataacagggttggaatctaa 29700567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 31226433 - 31226477
Alignment:
Q  27 caaaatccatgaaggtccaaaaccaaagaatcttcaaattataggg 72  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||    
T  31226433 caaaattcatgaaggtccaaaaccaaa-aatcttcaaattacaggg 31226477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 32682418 - 32682462
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  32682418 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 32682462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 42056107 - 42056063
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  42056107 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 42056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 50719847 - 50719880
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaat 65  Q
    |||||||||||||||||||||| |||||||||||    
T  50719847 tccatgaaggtccaaaaccaaaaaatcttcaaat 50719880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 5514603 - 5514646
Alignment:
Q  23 cagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||    
T  5514603 cagtcaaaattcataaaggtccaaaaccaaa-aatcttcaaatta 5514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 29172756 - 29172800
Alignment:
Q  37 gaaggtccaaaaccaaagaatcttcaaattatagggtttgaatct 81  Q
    |||||| |||||||||||||||||||||||| | |||| ||||||    
T  29172756 gaaggttcaaaaccaaagaatcttcaaattacaaggttggaatct 29172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 5303697 - 5303746
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  5303697 catgaaggtctaaaaccaaagaatcttcaaattacagggttggaatctaa 5303746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 17030657 - 17030597
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| | |||| ||||||||    
T  17030657 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaattacaaggttggaatctaa 17030597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 21113005 - 21113043
Alignment:
Q  45 aaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21113005 aaaaccaaagaatcttcaaattatagggttagaatctaa 21113043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 25125003 - 25125052
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattataggg 72  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  25125003 acagtcaaaattcatgaaggtcaaaaaccaaa-aatcttcaaattataggg 25125052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 55257758 - 55257708
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||||||||  ||| |||||||||||||||||||| ||||||||    
T  55257758 ccatgaaggtccaaaataaaaaaatcttcaaattatagggttggaatctaa 55257708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13041610 - 13041654
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  13041610 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 13041654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13049687 - 13049731
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  13049687 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 13049731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 19111187 - 19111231
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  19111187 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 19111231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 25158917 - 25158857
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||||| |||||| |||||||||| |||||| ||||||||| |||||| ||||||||    
T  25158917 acagtcaaaattcatgaatgtccaaaacc-aagaatattcaaattacagggttggaatctaa 25158857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 52839546 - 52839590
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  52839546 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 52839590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 300423 - 300458
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  300423 tccatgaaggtccaaaaccaaaaaatcttcaaatta 300458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 13041482 - 13041447
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  13041482 tccatgaaggtccaaaaccaaaaaatcttcaaatta 13041447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 13049559 - 13049524
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  13049559 tccatgaaggtccaaaaccaaaaaatcttcaaatta 13049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 22818008 - 22817966
Alignment:
Q  24 agtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  22818008 agtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 22817966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 52839418 - 52839383
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  52839418 tccatgaaggtccaaaaccaaaaaatcttcaaatta 52839383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 7013373 - 7013414
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||  |||||| ||||||||||||||||||||||||||    
T  7013373 tcaaaatttatgaagatccaaaaccaaagaatcttcaaatta 7013414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 13439815 - 13439855
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  13439815 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 13439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 18359438 - 18359483
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||| ||| |||||||||||| ||||||    
T  18359438 acagtcaaaattcatgaaggtctaaatccaaagaatctttaaatta 18359483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 28735571 - 28735527
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||    
T  28735571 acagccaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 28735527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 30226316 - 30226349
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  30226316 catgaaggtccaaaatcaaagaatcttcaaatta 30226349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 31073908 - 31073948
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  31073908 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 31073948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 31293699 - 31293743
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  31293699 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 31293743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 43426244 - 43426211
Alignment:
Q  122 ctaatattatagggggtaaacatgtattaaccct 155  Q
    ||||||||| ||||||||||||||||||||||||    
T  43426244 ctaatattacagggggtaaacatgtattaaccct 43426211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 52962359 - 52962315
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  52962359 acagtcaaaattcatgaaggtccaaaaccaaaaaat-ttcaaatta 52962315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 7308254 - 7308302
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatct 81  Q
    ||||||||||| ||||  ||| |||||||||||||||||||| ||||||    
T  7308254 ccatgaaggtcaaaaataaaaaaatcttcaaattatagggttggaatct 7308302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 14004348 - 14004316
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||| ||||||||||||    
T  14004348 catgaaggtccaaaaccaaaaaatcttcaaatt 14004316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 43426453 - 43426501
Alignment:
Q  35 atgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    ||||||||| |||| |||| ||||||||||||| |||||| ||||||||    
T  43426453 atgaaggtctaaaatcaaaaaatcttcaaattacagggttcgaatctaa 43426501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 18232008 - 18232063
Alignment:
Q  24 agtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaat 79  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| |||||| ||||    
T  18232008 agtcaaaattcatgaaggttcaaaaccaaagaatctttaaattacagggttggaat 18232063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 21144077 - 21144027
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaatctaa 83  Q
    |||||||||||||||| |||| ||||||||||||| |||||| ||||||||    
T  21144077 ccatgaaggtccaaaatcaaaaaatcttcaaattacagggttggaatctaa 21144027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 4414055 - 4414011
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  4414055 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 4414011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 11721394 - 11721350
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  11721394 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 11721350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 11721522 - 11721557
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  11721522 tccatgaaggtccaaaaccaaaaaatcttcaaatta 11721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 23159690 - 23159725
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  23159690 tccatgaaggtccaaaaccaaaaaatcttcaaatta 23159725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 38874457 - 38874422
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  38874457 tccatgaaggtccaaaaccaaaaaatcttcaaatta 38874422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 41123263 - 41123228
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  41123263 tccatgaaggtccaaaaccaaaaaatcttcaaatta 41123228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 13153739 - 13153784
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattat 68  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  13153739 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaacttat 13153784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 25233876 - 25233917
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  25233876 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 25233917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 25298036 - 25298077
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  25298036 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 25298077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 25919814 - 25919848
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  25919814 ccatgaaggtccaaaaccaaaaaatcttcaaatta 25919848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 26243226 - 26243185
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  26243226 gtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 26243185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 26243356 - 26243390
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  26243356 tccatgaaggtccaaaaccaaaaaatcttcaaatt 26243390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 37217425 - 37217391
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatt 66  Q
    |||||||||||||||||||||| ||||||||||||    
T  37217425 tccatgaaggtccaaaaccaaaaaatcttcaaatt 37217391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6527415 - 6527472
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattatagggtttgaat 79  Q
    |||||||||||  |||||||||||||| |||| || ||||||||||||| ||| ||||    
T  6527415 acagtcaaaatttatgaaggtccaaaatcaaataaccttcaaattatagagttggaat 6527472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 7577874 - 7577837
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  7577874 tccatgaagatccaaaaccaaaaaatcttcaaattata 7577837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 8855526 - 8855482
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  8855526 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 8855482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12148155 - 12148199
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||||    
T  12148155 acagtcaaaattcatgaaggtccaaaa-caaaaaatcttcaaatta 12148199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 20355143 - 20355099
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||    
T  20355143 acagtcaaaattcatgaaggttcaaaaccaaa-aatcttcaaatta 20355099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 22756315 - 22756355
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  22756315 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 22756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 25962926 - 25962886
Alignment:
Q  26 tcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  25962926 tcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 25962886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 29691216 - 29691249
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  29691216 catgaaggtccaaaaccaaaaaatcttcaaatta 29691249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 31312700 - 31312744
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  31312700 acagtcaaaattcatgaaggtctaaaaccaaa-aatcttcaaatta 31312744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 31567761 - 31567717
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||    
T  31567761 acagtcaaaattcttgaaggtccaaaaccaaa-aatcttcaaatta 31567717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 31567847 - 31567880
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||| |||||||||||||    
T  31567847 catgaaggtccaaaaccaaaaaatcttcaaatta 31567880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 31920188 - 31920144
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  31920188 acagtcaaaattcatgaaggtccaaaaccaaa-aaacttcaaatta 31920144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 37869557 - 37869590
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  37869557 catgaaggtccaaaatcaaagaatcttcaaatta 37869590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 38083061 - 38083094
Alignment:
Q  34 catgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  38083061 catgaaggtccaaaatcaaagaatcttcaaatta 38083094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 41123391 - 41123435
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||    
T  41123391 acagtcgaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 41123435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 12148025 - 12147993
Alignment:
Q  35 atgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||| |||||||||||||    
T  12148025 atgaaggtccaaaaccaaaaaatcttcaaatta 12147993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 23159592 - 23159549
Alignment:
Q  25 gtcaaaatccatgaaggtccaaaaccaaagaatcttcaaattata 69  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||    
T  23159592 gtcaaaattcatgaaggtccaaaaccaaa-aatctttaaattata 23159549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 306723 - 306757
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||||||||||||||||    
T  306723 ccatgaaggtccaaaaccaaagaatcttcaaatta 306757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 212641 - 212597
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  212641 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 212597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 332192 - 332148
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  332192 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaatta 332148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 432515 - 432480
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  432515 tccatgaaggtccaaaaccaaaaaatcttcaaatta 432480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 63151 - 63116
Alignment:
Q  32 tccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    |||||||||||||||||||||| |||||||||||||    
T  63151 tccatgaaggtccaaaaccaaaaaatcttcaaatta 63116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1462 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 336 - 370
Alignment:
Q  33 ccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||||||||||||| |||||||||||||    
T  336 ccatgaaggtccaaaaccaaaaaatcttcaaatta 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 18847 - 18888
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaa 64  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  18847 acagtcaaaattcatgaaggtccaaaaccaaa-aatcttcaaa 18888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 9349 - 9305
Alignment:
Q  22 acagtcaaaatccatgaaggtccaaaaccaaagaatcttcaaatta 67  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  9349 acagtcaaaattcatgaaggtccaaaaccaaaaaat-ttcaaatta 9305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University