View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_high_6 (Length: 455)
Name: NF13881_high_6
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 41786915 - 41787358
Alignment:
| Q |
14 |
cagaacctgtggaatcaattgaaattgtgattgggagag--gtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaag |
111 |
Q |
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| T |
41786915 |
cagaacgtgtggaatcaattgaaattgtgattgggagagaggtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaag |
41787014 |
T |
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| Q |
112 |
actggaaggnnnnnnnnctagccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatat--ggagata |
209 |
Q |
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| T |
41787015 |
actggaaggaaaaaaaactagccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatatatggagata |
41787114 |
T |
|
| Q |
210 |
tagcccgttttaaatttgtcaaagttaataatgttaaaatactagcaatttggttcatgtattagattctgcttccaatccacatctttaactgtcctat |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41787115 |
tagcccgttttaaatttgtcaaagttaataatattaaaatactagcaatttggttcatgtatttgattctgcttccaatccacatctttaactgtcctat |
41787214 |
T |
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| Q |
310 |
atgtactgttttaagttttcaatttcaag-----------------tgtttcaatttgtcttttatgttccaaaataataaatactccttttttattatg |
392 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41787215 |
atgtactgttttaagttttcaatttcaagtctttgtattttctatatgtttcaatttgtcttttatgttccaaaataacaaatactccttttttattatg |
41787314 |
T |
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| Q |
393 |
tgatgcaacaaatgagtttattttggttttacttaatcgcatac |
436 |
Q |
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| T |
41787315 |
tgatgcaacaaatgagtttattttggttttacttaatcgcatac |
41787358 |
T |
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