View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_high_7 (Length: 450)
Name: NF13881_high_7
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_high_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 36 - 433
Target Start/End: Complemental strand, 45961750 - 45961353
Alignment:
| Q |
36 |
gattcttgaagttcggcactgggagaccagaagttcaaccctgaatttagtttgcttcaagtcttttgactgaacgtatcagttagttttgaaaatgtaa |
135 |
Q |
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|||||||||||||||||||||||| || ||||||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45961750 |
gattcttgaagttcggcactgggaaactagaagttcagcgctgaatttagttttcttcgagtcttttgactgaacgtatcagttagttttgaaaatgtat |
45961651 |
T |
|
| Q |
136 |
agcattgtgtgttgaaccaaagatagggttcaatttgactgaatagtgtgggctgtttgaattatgaatttactgatgaactgtctagctgtaaaagttc |
235 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961650 |
agcattgtgcgttgaaccaaagataggggtcaatttgactgaatagtgtgggctgtttgaattatgaatttactgatgaactgtctagctgtaaaagttc |
45961551 |
T |
|
| Q |
236 |
tgattattattttgtcgataccatcaaaatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccatcttca |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45961550 |
tgattattattttgtcgataccatcaaaatcggtacaaatcccctttgcttatataattttagtacgtataatatgcaactttcattaacaccatcttca |
45961451 |
T |
|
| Q |
336 |
ttaatcaatgcagtaacccattaccataattcaaactagtttttatattttcatattagggatttgcaatttatacaccatagattcagcacataatc |
433 |
Q |
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| T |
45961450 |
ttaatcaatgcggtaacccattaccataattcaaactagtttttatattttcatattagggatttgcaatttatacaccatagattcagcacataatc |
45961353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 292072 - 292492
Alignment:
| Q |
1 |
ttattctgaaattattttgttatcatatgcttgaa-gattcttgaagttcggcactgggagaccagaagttcaaccctgaatttagtttgcttcaagtct |
99 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |
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| T |
292072 |
ttattctgtaattattttgttatcatatgcttaaatgattcttgaagttcggcactgggaaaccagaagttcaaccctgaatttagtttgccttgagtct |
292171 |
T |
|
| Q |
100 |
tttgactgaacgtatcagttagttttgaaaatgtaaagcattgtgtgttgaaccaaagatagggttcaatttgactgaatagtgtgggctgtttgaatta |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
292172 |
tttgactgaacgtatcggttagttttgaaaatgtaaagcattgtgcgttgaaccaaagatagggttcaatttgactgaatagtgtgagctgtttgaatta |
292271 |
T |
|
| Q |
200 |
tgaatttactgatgaactgtctagctgtaaaagttctgattattattttgtcgataccatcaaaatcggtacaaatcccctttgcttatataattttagt |
299 |
Q |
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| T |
292272 |
tgaatttaccgatgaactgtctagctgtaaaagttctgattattattttgtcgataccatccaaatcggtacaaatcccctttgcttatataattttagt |
292371 |
T |
|
| Q |
300 |
acgtataatatgcaactttcattaacaccatcttcattaatcaatgcagtaacccattaccataattcaaactagtttttatattttcatattagggatt |
399 |
Q |
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||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
292372 |
acgtataatatgcaactttcattaacaccgtctt-------------tgtaatccattaccacaattcaaactagtttttatattttcatattagtgatt |
292458 |
T |
|
| Q |
400 |
tgcaatttatacaccatagattcagcacataatc |
433 |
Q |
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||||||||||| |||| ||||||||||||||||| |
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| T |
292459 |
tgcaatttataaaccacagattcagcacataatc |
292492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 33132540 - 33132502
Alignment:
| Q |
370 |
actagtttttatattttcatattagggatttgcaattta |
408 |
Q |
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| T |
33132540 |
actagtttttatattttcatattagtgatttgtaattta |
33132502 |
T |
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