View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_high_8 (Length: 420)
Name: NF13881_high_8
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 31059653 - 31059248
Alignment:
| Q |
1 |
gaaacggagataaaagagaagaaagtaatgaagaaaaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgc |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059653 |
gaaaaggagataaaagtgaagaaagtaatgaagaaaaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgc |
31059554 |
T |
|
| Q |
101 |
atggaaagcttctttctttgtcatcagtaagatactatcattagtttatttcatgtttgtagctacactnnnnnnntgtttttatttcatcaatgcttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31059553 |
atggaaagcttctttctttgtcatcagtaagatactatcattagtttatttcatgtttgtagctacactaaaaaaatgtttttatttcatcaatgcttta |
31059454 |
T |
|
| Q |
201 |
acatgtaacatgttttacttgattttgagcagtggttgaaattagtgaaaggatgagccactatggactaaccatgaaccttatcacatacctaactgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31059453 |
acatgtaacatgttttacttgattttgagcagtggttgaaattagtgaaaggatgagccactatggactaaccatgaaccttatcacatacctgactgaa |
31059354 |
T |
|
| Q |
301 |
gtgattcatgaagatctcaaaacagctgctaaaaatgtaaacacctggataggagtaacaactttaatgcctctggtaggaggatttattgctgatgcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059353 |
gtgattcatgaagatctcaaaacagctgctaaaaatgtaaacacctggataggagtaacaactttaatgcctctggtaggaggatttattgctgatgcat |
31059254 |
T |
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| Q |
401 |
atactg |
406 |
Q |
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|||||| |
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| T |
31059253 |
atactg |
31059248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 31085745 - 31085625
Alignment:
| Q |
14 |
aagagaagaaagtaatgaagaaaaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgcatggaaagcttct |
113 |
Q |
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||||||||||||| | |||| |||||||| |||||||||||| | |||| |||||||| |||||||||||||||| ||||||| ||||| ||||||| |
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| T |
31085745 |
aagagaagaaagtgaacaagagaaatgggtttatgatggttctgtggattgtaaaggaaaagttcctcttcgtgctaaaactggtgtatggatagcttct |
31085646 |
T |
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| Q |
114 |
ttctttgtcatcagtaagata |
134 |
Q |
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|||||||| ||||||||||| |
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| T |
31085645 |
ctctttgtcctcagtaagata |
31085625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 31069032 - 31068934
Alignment:
| Q |
36 |
aaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgcatggaaagcttctttctttgtcatcagtaagata |
134 |
Q |
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| T |
31069032 |
aaatgggtttatgatggttctgtggattgtaaaggcaaagttccccttcgtgctaaaactggtgtatggatagcttctctctttgtcctaagtaagata |
31068934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 6150053 - 6149971
Alignment:
| Q |
36 |
aaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgcatggaaagcttctttctt |
118 |
Q |
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|||||||| ||||| ||| |||||| |||| |||||||||||||| || ||||| |||||||| |||||||| |||||||| |
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| T |
6150053 |
aaatgggttcatgattcttcatttgatcataatggaagagttcctctccgagcttcaactggtgcttggaaagcctctttctt |
6149971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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