View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13881_low_1 (Length: 918)

Name: NF13881_low_1
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13881_low_1
NF13881_low_1
[»] chr3 (4 HSPs)
chr3 (410-903)||(32256628-32257122)
chr3 (11-419)||(32256088-32256483)
chr3 (628-727)||(26551603-26551702)
chr3 (656-690)||(19869015-19869049)
[»] chr6 (1 HSPs)
chr6 (628-725)||(26390942-26391039)
[»] chr5 (3 HSPs)
chr5 (628-722)||(21023616-21023710)
chr5 (659-694)||(20077659-20077694)
chr5 (425-519)||(31559402-31559496)
[»] chr8 (1 HSPs)
chr8 (626-727)||(14348997-14349098)
[»] chr1 (3 HSPs)
chr1 (626-727)||(11405653-11405753)
chr1 (626-727)||(47643194-47643294)
chr1 (658-711)||(5317879-5317932)
[»] chr4 (2 HSPs)
chr4 (629-748)||(26156799-26156918)
chr4 (370-519)||(26157028-26157173)
[»] chr2 (5 HSPs)
chr2 (626-711)||(40139125-40139209)
chr2 (667-727)||(25925145-25925205)
chr2 (633-732)||(28495111-28495210)
chr2 (599-749)||(40778937-40779085)
chr2 (549-691)||(38070580-38070722)
[»] scaffold1603 (1 HSPs)
scaffold1603 (600-708)||(1326-1434)
[»] chr7 (3 HSPs)
chr7 (635-723)||(30058170-30058258)
chr7 (371-502)||(8438314-8438447)
chr7 (656-689)||(28577970-28578003)
[»] scaffold1431 (1 HSPs)
scaffold1431 (641-694)||(478-531)
[»] scaffold0214 (1 HSPs)
scaffold0214 (656-694)||(20088-20126)
[»] scaffold0060 (1 HSPs)
scaffold0060 (700-824)||(72852-72977)


Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 410 - 903
Target Start/End: Original strand, 32256628 - 32257122
Alignment:
Q  410 attactatcc-agttctattcacaattatttgtgtttaatgatatttatatatggatcacatatgaaataagtctaaatatcaattgactactatcccta 508  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  32256628 attactatcccagttctattcacaattatttgtgtttaatgatatttatatatcgatcacatatgaaatgagtctaaatatcaattgactactatcccta 32256727  T
Q  509 gttattgaatttgatgattatttttaacctaataggtaactttagagatagaagattattaggttatgattgagaaattaacgnnnnnnnaaaaccttca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||    
T  32256728 gttattgaatttgatgattatttttaacctaataggtaactttagagatagaagattattaagttatgattgagaaattaatgtttcattaaaaccttca 32256827  T
Q  609 acgtttacgagcttacataagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaa 708  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  32256828 acgtttacgggcttacataagagattagggggttgtaactttagaatagagttttaaatcaagagattgatcaaaaatattttgttgatgtatcgtgaaa 32256927  T
Q  709 ctaatagaataattgtagaagatatgtacaatttaccaaataatgaacaatatagaattcgaaagacctgatcaccttttatcttgtaattataaaccat 808  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  32256928 ctaatagaataattgtagaagatatctacaatttaccaaataatgagcaatataggattcgaaagacctggacaccttttatcttgtaattataaaccat 32257027  T
Q  809 tttatttgcattttacatttaattgaatgtttttgagccaaatcaatttccatgttcaacctccctattttatacatatgatctgataatgtcat 903  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32257028 tttatttgcattttacatttaattgaatgtttttgagccaaatcaatttccatgttcaacctccctattttatacatatgatctgataatgtcat 32257122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 32256088 - 32256483
Alignment:
Q  11 gagaagaaccaaaagattaatttgaaaatgcaggaaaattgtgttaggaatttcagcaacgtgccacaattgtactgttaaaatgccagacacgtaagat 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32256088 gagaagaaccaaaagattaatttgaaaatgcaagaaaattgtgttaggaatttcagcaacgtgccacaattgtactgttaaaatgccagacacgtaagat 32256187  T
Q  111 taatgagtaattgtggcatgatttctcagaatatggcttaa-ttttcagttagagaaccatatctataaaagacaaacttcnnnnnnnaagcaggagttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||       ||||||||||||    
T  32256188 taatgagtaattgtggcatgatttctcagaatatggcttaatttttcagttagagaaccat--------aagacaaacttctttttttaagcaggagttc 32256279  T
Q  210 aatttgggagctttgaagatcagagaacttaaagtggatcatcaacctactcatagtgtgtcctgatttatgcaatgtctccaaatctttaggttattta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||       
T  32256280 aatttgggagctttgaagatcagagaacttaaagtggatcatcaacctactcatagtgtgttctgatttatgcaatgtctccaaatctttaggctat--- 32256376  T
Q  310 tactatagtcatgagtagctaatttacctccgattgggtcttagataaatatattgcaagttgtttgaaccatgtgattgtattaactttgttaaatgca 409  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  32256377 ---tatagtcatgagtagctaatttacctccgattgggtcttagataaatatattgtaagttgtttgaaccatgtgattgtattaactttgttaaatgta 32256473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 727
Target Start/End: Original strand, 26551603 - 26551702
Alignment:
Q  628 agagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgtaga 727  Q
    ||||||||||| |||||| ||||||||  ||||| ||| |||||||||||||||| | ||||||||| || | ||| |||| ||| ||||||||||||||    
T  26551603 agagattagggtgttgtagctttagaagtgagttatgagtcaagagattgatcaacattattttgttaatttgtcgcgaaattaagagaataattgtaga 26551702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 656 - 690
Target Start/End: Original strand, 19869015 - 19869049
Alignment:
Q  656 agagttttgaatcaagagattgatcaaaactattt 690  Q
    |||||||||| ||||||||||||||||||||||||    
T  19869015 agagttttgagtcaagagattgatcaaaactattt 19869049  T

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Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 628 - 725
Target Start/End: Original strand, 26390942 - 26391039
Alignment:
Q  628 agagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgta 725  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||| ||  || || ||||||  ||||||||||||    
T  26390942 agagattagggggttgtaattagagaatagggttttgaatcaagagattgatcaaaactattttgttaattcattgttaaactaggagaataattgta 26391039  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 628 - 722
Target Start/End: Complemental strand, 21023710 - 21023616
Alignment:
Q  628 agagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataatt 722  Q
    ||||||||||||||||||| |  ||||||  ||||||||||||||||||||| |||||||||||||| ||  || |||||||||  |||||||||    
T  21023710 agagattagggggttgtaattagagaatatggttttgaatcaagagattgatgaaaactattttgttaattcattgtgaaactaggagaataatt 21023616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 694
Target Start/End: Original strand, 20077659 - 20077694
Alignment:
Q  659 gttttgaatcaagagattgatcaaaactattttgtt 694  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20077659 gttttgattcaagagattgatcaaaactattttgtt 20077694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 519
Target Start/End: Complemental strand, 31559496 - 31559402
Alignment:
Q  425 tattcacaattatttgtgtttaatgatatttatatatggatcacatatgaaataagtctaaatatcaattgactactatccctagttattgaatt 519  Q
    |||||| ||||||||||  |||||| | ||| ||||| |||||| ||| || ||| |  ||||||||||||||||||| | |||| |||||||||    
T  31559496 tattcataattatttgttcttaatggtttttctatattgatcacgtataaactaatttcaaatatcaattgactactagctctagctattgaatt 31559402  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 727
Target Start/End: Original strand, 14348997 - 14349098
Alignment:
Q  626 taagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgta 725  Q
    ||||||||||||| |||||| |||||||| || ||| ||| ||||| |||||||||||||||||||||| || | | || | ||||| | ||||||||||    
T  14348997 taagagattagggtgttgtagctttagaagagtgttctgagtcaagggattgatcaaaactattttgttaatttctagtaagactaaaaaaataattgta 14349096  T
Q  726 ga 727  Q
    ||    
T  14349097 ga 14349098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 727
Target Start/End: Complemental strand, 11405753 - 11405653
Alignment:
Q  626 taagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgta 725  Q
    ||||| ||| ||| |||||||||| |||| |||||||||||| ||| ||||||||| |||||||||| | || |||||||| ||||  ||||||||||||    
T  11405753 taagaaatttgggtgttgtaacttgagaagagagttttgaattaag-gattgatcagaactattttgataatttatcgtgagactatgagaataattgta 11405655  T
Q  726 ga 727  Q
    ||    
T  11405654 ga 11405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 626 - 727
Target Start/End: Complemental strand, 47643294 - 47643194
Alignment:
Q  626 taagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgta 725  Q
    ||||||||||||| |||||| ||||| || |||||||||| |||| |||||||||| |||||||||||| || | |||| ||  ||  ||||||||||||    
T  47643294 taagagattagggtgttgtacctttaaaagagagttttgagtcaa-agattgatcagaactattttgttaatttgtcgtaaatttaggagaataattgta 47643196  T
Q  726 ga 727  Q
    ||    
T  47643195 ga 47643194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 5317932 - 5317879
Alignment:
Q  658 agttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaacta 711  Q
    |||||||| |||||||||||||||||||||||||||| ||  ||||| ||||||    
T  5317932 agttttgattcaagagattgatcaaaactattttgttaattcatcgtaaaacta 5317879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 629 - 748
Target Start/End: Complemental strand, 26156918 - 26156799
Alignment:
Q  629 gagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgtagaa 728  Q
    ||||||| ||||||||||| |||||  || |||||||||||| ||||||||   || ||||||||| || |||||||||||||  | ||||||||||||     
T  26156918 gagattatggggttgtaaccttagatgagggttttgaatcaaaagattgatttgaaatattttgttaatttatcgtgaaactatgataataattgtagag 26156819  T
Q  729 gatatgtacaatttaccaaa 748  Q
    |||   | ||||||||||||    
T  26156818 gatggttgcaatttaccaaa 26156799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 519
Target Start/End: Complemental strand, 26157173 - 26157028
Alignment:
Q  370 ttgtttgaaccatgtgattgtattaactttgttaaatgcaattactatccagttcta-ttcacaattatttgtgtttaatgatatttatatatggatcac 468  Q
    ||||||||||||||||||||||| |||| | || ||| ||||||||||||     || || | ||||||||| || ||||| | ||||||| | ||||||    
T  26157173 ttgtttgaaccatgtgattgtataaactatatttaatacaattactatcc-----tagtttagaattatttgcgtgtaatgctttttatatcttgatcac 26157079  T
Q  469 atatgaaataagtctaaatatcaattgactactatccctagttattgaatt 519  Q
    |||| |||| | | ||||||||||||||||||||  | ||||| |||||||    
T  26157078 atattaaatgaatttaaatatcaattgactactagtcatagttgttgaatt 26157028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 626 - 711
Target Start/End: Original strand, 40139125 - 40139209
Alignment:
Q  626 taagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaacta 711  Q
    |||||||||| ||| || |||||| |||| |||||||||| ||||||||||||||||||||||| |||| || | |||| ||||||    
T  40139125 taagagattaagggattataactt-agaaaagagttttgactcaagagattgatcaaaactattgtgttaatctgtcgtaaaacta 40139209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 727
Target Start/End: Complemental strand, 25925205 - 25925145
Alignment:
Q  667 tcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgtaga 727  Q
    |||||||||||||||||||||||||||| || |||||| | | ||| ||||||||||||||    
T  25925205 tcaagagattgatcaaaactattttgttaatttatcgtcagattaagagaataattgtaga 25925145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 28495210 - 28495111
Alignment:
Q  633 ttagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattgtagaagata 732  Q
    |||||| |||||| |||||||| || ||| | | ||||  ||||||||| ||||||||||||| | |||||||||| ||  ||| |||||||||||||||    
T  28495210 ttagggtgttgtagctttagaagagggttcttagtcaaatgattgatcagaactattttgttgttttatcgtgaaattaggagagtaattgtagaagata 28495111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 749
Target Start/End: Complemental strand, 40779085 - 40778937
Alignment:
Q  599 aaaaccttcaacgtttacgagcttacataagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatg 698  Q
    ||||||||||| | |||||| || || ||| ||||| |||| ||||||  ||| || || ||||||| ||||||||||||||| | |||||||||| ||     
T  40779085 aaaaccttcaaagattacgaactcacctaacagatt-ggggtttgtaatcttataagagggttttgagtcaagagattgatcagatctattttgttaat- 40778988  T
Q  699 tatcgtgaaactaatagaataattgtagaagatatgtacaatttaccaaat 749  Q
    |||| ||| || || ||||||||||||||  ||| || |||||||| ||||    
T  40778987 tatcatgagacgaaaagaataattgtagagaataggtgcaatttactaaat 40778937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 691
Target Start/End: Original strand, 38070580 - 38070722
Alignment:
Q  549 tttagagatagaagattattaggttatgattgagaaattaacgnnnnnnnaaaaccttcaacgtttacgagcttacataagagattagggggttgtaact 648  Q
    ||||| |||||| |||| |||||||||||   | |||||||||       ||||||||||||| |||||  || || |||| |||||||| |||||||||    
T  38070580 tttagggatagatgattgttaggttatgacataaaaattaacgttcatataaaaccttcaacgcttacggactcacctaagtgattagggtgttgtaact 38070679  T
Q  649 ttagaatagagttttgaatcaagagattgatcaaaactatttt 691  Q
    | |||| |||| | ||| |||||| |||||| | |||||||||    
T  38070680 tgagaagagagctctgagtcaagaaattgattagaactatttt 38070722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 708
Target Start/End: Original strand, 1326 - 1434
Alignment:
Q  600 aaaccttcaacgtttacgagcttacataagagattagggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgt 699  Q
    |||||||||||| |||||  ||||  ||||||||||| | |||||| |||||||| |  |||||||  ||| |||||||||| |||||||||||| || |    
T  1326 aaaccttcaacggttacggacttatctaagagattagagtgttgtagctttagaagaaggttttgagccaatagattgatcataactattttgttaattt 1425  T
Q  700 atcgtgaaa 708  Q
    ||| |||||    
T  1426 atcatgaaa 1434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 723
Target Start/End: Complemental strand, 30058258 - 30058170
Alignment:
Q  635 agggggttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgttgatgtatcgtgaaactaatagaataattg 723  Q
    |||| ||||||  ||||||| || ||||||| ||||| |||||||||||||||||||||| || | |||||| ||||  ||||||||||    
T  30058258 agggtgttgtagttttagaagagtgttttgagtcaagggattgatcaaaactattttgttaatttgtcgtgagactaggagaataattg 30058170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 502
Target Start/End: Complemental strand, 8438447 - 8438314
Alignment:
Q  371 tgtttgaaccatgtgattgtattaactttgttaaatgcaattactatcc-agttctattcacaattatttgtgtttaatgatatttatatatggatcaca 469  Q
    |||||||| ||||||||||||| ||||   || ||| ||||| |||||| |||| |||||| ||||| |||||| ||||  | ||||||| | ||||| |    
T  8438447 tgtttgaaacatgtgattgtataaactcgatttaatacaattgctatcctagttttattcataattaattgtgtgtaattctttttatatcttgatcaaa 8438348  T
Q  470 tatgaa-ataagtctaaatatcaattgactacta 502  Q
    |||| | | || | ||||||||||||||||||||    
T  8438347 tatgcacaaaaatataaatatcaattgactacta 8438314  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 689
Target Start/End: Complemental strand, 28578003 - 28577970
Alignment:
Q  656 agagttttgaatcaagagattgatcaaaactatt 689  Q
    |||||||||| |||||||||||||||||||||||    
T  28578003 agagttttgactcaagagattgatcaaaactatt 28577970  T

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Target: scaffold1431 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 531 - 478
Alignment:
Q  641 ttgtaactttagaatagagttttgaatcaagagattgatcaaaactattttgtt 694  Q
    |||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||    
T  531 ttgtaattttagaaaaggattttgactcaagagattgatcaaaactattttgtt 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 656 - 694
Target Start/End: Original strand, 20088 - 20126
Alignment:
Q  656 agagttttgaatcaagagattgatcaaaactattttgtt 694  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  20088 agagttttgagtcaagagattgatcaaaactaatttgtt 20126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 824
Target Start/End: Original strand, 72852 - 72977
Alignment:
Q  700 atcgtgaaactaatagaataattgtagaagatatgtacaatttaccaaataatgaacaatatagaattcgaaagacctgatcaccttttatcttgtaatt 799  Q
    |||||||| |||  |||||||||||||| |||| || |||||||   || || || ||||| ||||||| |||||| ||||| | |||||||||| ||||    
T  72852 atcgtgaatctaggagaataattgtagatgataagtgcaatttattgaacaacgagcaatagagaattcaaaagacatgatctcattttatcttgaaatt 72951  T
Q  800 at-aaaccattttatttgcattttac 824  Q
     | |||||| |||| | |||||||||    
T  72952 ctaaaaccaatttactcgcattttac 72977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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