View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13881_low_12 (Length: 340)
Name: NF13881_low_12
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 5932865 - 5932532
Alignment:
| Q |
1 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5932865 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
5932766 |
T |
|
| Q |
101 |
aaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5932765 |
aaaaatgctgttaggactatagcaataagaccaggcaccatgcccaacttcttcacacaagcaggcaagcccatgatcccagcaccgataactgttgtcg |
5932666 |
T |
|
| Q |
201 |
ataaattgaaaacagctccagaaaatgaagctccattaaattcatgtaactcggtatcgctttcttgagacttaggtaacaaaggcacattctcatcaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5932665 |
ataaattgaaaacagctccagaaaatgaagctccattaaattcatgtaactcggtatcgctttcttgagacttaggtaacaaaggcacattctcatcaac |
5932566 |
T |
|
| Q |
301 |
aacttccttgttcttccttgttttcttcatctca |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
5932565 |
aacttccttgttcttccttgttttcttcttctca |
5932532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 5961751 - 5961432
Alignment:
| Q |
1 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
100 |
Q |
| |
|
|||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||| || |||||||||| |||||| |||| || |||||||||| |
|
|
| T |
5961751 |
ttttccgtatttcccaaaggtatctcccataagacttccataggaagaaagattccctgctctcgaaaacctgatcatgaactcaattgccttctctgtc |
5961652 |
T |
|
| Q |
101 |
aaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcg |
200 |
Q |
| |
|
|| ||||||||||||| ||| | || ||||||||| ||||| |||||||| || || ||||| ||||| ||||||||||||||||| |||||||| || | |
|
|
| T |
5961651 |
aataatgctgttaggattatggcaagaagaccaggtaccattcccaactttttgacgcaagcgggcaagcccatgatcccagcaccaataactgtggtgg |
5961552 |
T |
|
| Q |
201 |
ataaattgaaaacagctccagaaaatgaagctccattaaattcatgtaactcggtatcgctttcttgagacttaggtaacaaaggcacattctcatcaac |
300 |
Q |
| |
|
| |||||||||||||| |||| ||||||||||||||| |||||||| ||||| | ||| |||||||| || ||||||||||||| |||| |||||||| |
|
|
| T |
5961551 |
acaaattgaaaacagccccaggaaatgaagctccattgaattcatgaaactcagcatctgtttcttgacacataggtaacaaaggtgcattttcatcaac |
5961452 |
T |
|
| Q |
301 |
aacttccttgttcttccttg |
320 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
5961451 |
aacttcctttttcttccttg |
5961432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 5967261 - 5967017
Alignment:
| Q |
1 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
100 |
Q |
| |
|
|||||| ||| ||||| ||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
5967261 |
ttttccgtatttcccataggcatctcccataagatttccataggaagaaagtttccctgccctagaaaacctgattatgaaatcaattgacttctctgtc |
5967162 |
T |
|
| Q |
101 |
aaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcg |
200 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||||||| || ||||| |||||||| |||||||| ||||| || |||||||| |||| ||| || | |
|
|
| T |
5967161 |
aataaagctgttaggactatgacaataagaccaggcaccatccctaactttttcacacatgcaggcaatcccataattccagcaccaataattgtggttg |
5967062 |
T |
|
| Q |
201 |
ataaattgaaaacagctccagaaaatgaagctccattaaattcat |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5967061 |
ataaattgaaaacagcaccagaaaatgaagctccattaaattcat |
5967017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 5983175 - 5982851
Alignment:
| Q |
1 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | || || |||| |||||| ||||| |
|
|
| T |
5983175 |
ttttccgtatttcccaaaggcatcccccataagacttccataggaagaaagattccctgccctcgaaaacctaatcacaaactcaattgacttttctgtt |
5983076 |
T |
|
| Q |
101 |
aaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcg |
200 |
Q |
| |
|
| |||||||| |||| ||| | || ||||||||| ||||| |||||||| | |||||||||||||| |||||||| || ||||| || ||||| || | |
|
|
| T |
5983075 |
agtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttctgacacaagcaggcaagcccatgattccggcaccaatgactgtggttg |
5982976 |
T |
|
| Q |
201 |
ataaattgaaaacagctccagaaaatgaagctccattaaattcatgtaactcggtatcgctttcttgagacttaggtaacaaaggcacattctcatcaac |
300 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |||||||||||| | || || ||||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
5982975 |
acaaattgaaaacagctcctgaaaatgaagctctattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccatcaac |
5982876 |
T |
|
| Q |
301 |
aacttccttgttcttccttgttttc |
325 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
5982875 |
cacttccttcttcttccttgttttc |
5982851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 5630410 - 5630486
Alignment:
| Q |
161 |
gcaggcaaacccatgatcccagcaccgataactgttgtcgataaattgaaaacagctccagaaaatgaagctccatt |
237 |
Q |
| |
|
||||||||| ||||||| |||||||| |||| || |||| || |||||||| || || ||||||||||||||||| |
|
|
| T |
5630410 |
gcaggcaaagccatgattccagcaccaataatcgtagtcgccaagttgaaaacggcaccggaaaatgaagctccatt |
5630486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University