View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_low_19 (Length: 268)
Name: NF13881_low_19
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 24436731 - 24436490
Alignment:
| Q |
19 |
tttatatatataaggggtgtcaattagaattgcatggggtacatggttaaggctcaaaggcatcaaaggtgcatgattttattaaaaaattcaacgccgt |
118 |
Q |
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| T |
24436731 |
tttatatatataaggggtgtcaattagaattgcatggggtacatggttaaggctcaaaggcatcaaaggtgcatgattttattaaaaaattcaacgccgt |
24436632 |
T |
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| Q |
119 |
tgagtgtgtgaaagaggcaggtagctcacccacaagatgcttggtcaacttcattttccttccctccctctctctttgttgactgtgttaaccatagttt |
218 |
Q |
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| T |
24436631 |
tgagtgtgtgaaagaggcaggtagctcacccacaagatgcttggtcaacttctttttccttccctccctctctctttgttgactgcgttaaccatagttt |
24436532 |
T |
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| Q |
219 |
gtgtgctttatgcatgtctttgccaagtttctctcctttgct |
260 |
Q |
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| T |
24436531 |
gtgtgctttatgcatgtcttggccaagtttctctcctttgct |
24436490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 11679572 - 11679450
Alignment:
| Q |
45 |
gaattgcatggggtacatggttaaggctcaaaggcatcaaaggtgcatgattttattaaaaaattcaacgccgttgagtgtgtgaaagaggcaggtagct |
144 |
Q |
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| T |
11679572 |
gaattgcattgggtgcattgtaaaggccaaaaggcatcaaaagcgcatgattttattaatgaattcaacgccattgagcgtgtgagagaggcaggtagct |
11679473 |
T |
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| Q |
145 |
cacccacaagatgcttggtcaac |
167 |
Q |
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| T |
11679472 |
cacccacaagatgctcggtcaac |
11679450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 40490398 - 40490578
Alignment:
| Q |
45 |
gaattgcatggggtacatggttaaggctcaaaggcatcaaaggtgcatgattttattaaaaaattcaacgccgttgagtgtgtgaaagaggcaggtagct |
144 |
Q |
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|||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||| |
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| T |
40490398 |
gaattgcatggggtgcattgtaaaggccaaaaggcatcaaaggcgcatgattttattaatgaattcaacgccattgagcgtgtgagagaggcaggtagct |
40490497 |
T |
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| Q |
145 |
cacccacaagatgcttggtcaacttcattttccttccctccctctctctttgttgactgtgttaaccatagtttgtgtgctttatgcat |
233 |
Q |
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| T |
40490498 |
cacccacaagatgctcggtcaacatc--------tctctttctctctctttgttgactgctttactcatagtttgtgtgcttaatgcat |
40490578 |
T |
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