View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_low_4 (Length: 499)
Name: NF13881_low_4
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Original strand, 25335867 - 25336332
Alignment:
| Q |
19 |
ggtcatgcatggaaacattacttgttttataaatctcagagaaataaatacattatattatgccatcttatannnnnnnnnaaagaggccaaatgtgata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
25335867 |
ggtcatgcatggaaacattacttgttttataaatctcagagaaataaatacattatattatgtcatcttatatttttttttaa-gaggccaaatgtgata |
25335965 |
T |
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| Q |
119 |
tatattaacttatatcatcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaacaaattctcactca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25335966 |
tatattaacttatatcatcttatattgaaacttattaacagaaataatttgaatgtgccaactaattatcattttcagacggtaaacaaattctcactca |
25336065 |
T |
|
| Q |
219 |
ttcctcaaaagtgatagaattgtctaaaaaatgttatatgacaaatcactacatcatgtatacaaacaaaatcatattccaatacaattaaattcatcta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
25336066 |
ttcctcaaaagtgatagaattgtctaaaaaatgttattt----aatcactacatcatgtatacaaacaaaatcatattgcaatacaattaaattcagcta |
25336161 |
T |
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| Q |
319 |
agtttgtatctcatgctaagtttcaagtacattaaaaccgtgtatctcacctactatcaatcacatacgcaattcaaccttaaccatatatttctatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25336162 |
agtttgtatctcatgctaagtttcaagtacattaaaaccgtgtatctcacctactatcaatcacatacgcaattcaaccttaaccatatatttctatttt |
25336261 |
T |
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| Q |
419 |
agaaacgtgccacttttagtcttttctttcttcatgttaaattagcccaattatgtcaacttttgcctatg |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25336262 |
agaaacgtgccacttttagtcttttctttcttcatgttaaattagcccaattatgtcaacttttgcttatg |
25336332 |
T |
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