View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13881_low_5 (Length: 493)
Name: NF13881_low_5
Description: NF13881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13881_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 6963395 - 6962921
Alignment:
| Q |
18 |
ctatgactcaagttgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatcagtatcagaaggctgaatactttcaaacaca |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6963395 |
ctatgactcaagctgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatcagtatcagaaggctgaatactttcaaacaca |
6963296 |
T |
|
| Q |
118 |
ccaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgcagcactcttgttattttccttaccaagttctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6963295 |
ccaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgcagcactcttgttattttccttaccaagttctt |
6963196 |
T |
|
| Q |
218 |
cctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaagcacctcttccctttgggtccaagaacgacgaacctcggtaaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6963195 |
cctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaggcacctcttccctttgggtccaagaacgacgaacctcggtaaga |
6963096 |
T |
|
| Q |
318 |
tggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatggcacgcgctcgcctccagggagctga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6963095 |
tggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatggcacgcgctcgcctccggggagctga |
6962996 |
T |
|
| Q |
418 |
acagtcacagcagcataatcaatgccatctttctcctcgaatttgactgtaccgtcaggagatacttcgaatggt |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6962995 |
acagtcacagcagcataatcaatgccatctttctcctcgaatttgactgtaccgtcaggagatacttcgaatggt |
6962921 |
T |
|
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Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 33605915 - 33606361
Alignment:
| Q |
18 |
ctatgactcaagttgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatcagtatcagaaggctgaatactttcaaacaca |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |
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| T |
33605915 |
ctatgactcaagctgagcataccaaacaccttggattttaacatcctttggtgctttagcacccaaatcagtgtcagacggctgaatactctcaaacaca |
33606014 |
T |
|
| Q |
118 |
ccaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgcagcactcttgttattttccttaccaagttctt |
217 |
Q |
| |
|
|||||||| |||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
33606015 |
ccaataacttcaccagtctcaggcttagtttgagtaacactcaatgtgattttccccttagatgatgcagcactcttgttgttttcctttccaagttctt |
33606114 |
T |
|
| Q |
218 |
cctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaagcacctcttccctttgggtccaagaacgacgaacctcggtaaga |
317 |
Q |
| |
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| ||||| |||||||| ||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||| || |||| ||| || |
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| T |
33606115 |
cttcatctcctcttcctccagctggcaatgcaactgcattgtcataaccggtagatgcacctcttccctttgggtccaagaaagagcttcctctgtatga |
33606214 |
T |
|
| Q |
318 |
tggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatggcacgcgctcgcctccagggagctga |
417 |
Q |
| |
|
|||||| ||| |||| ||||| ||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||| || || || |||||| |
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| T |
33606215 |
tggtaccaaatactcaccactgaagctctctggcttccctgatgctaccaattgtttgatggtgaaaaggaatggcacacgctcaccaccgggaagctga |
33606314 |
T |
|
| Q |
418 |
acagtcacagcagcataatcaatgccatctttctcctcgaatttgac |
464 |
Q |
| |
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|| || || || || || |||||||||||||||||||| |||||||| |
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|
| T |
33606315 |
actgtgactgcggcgtagtcaatgccatctttctcctcaaatttgac |
33606361 |
T |
|
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