View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13882_high_1 (Length: 313)
Name: NF13882_high_1
Description: NF13882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13882_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 37450652 - 37450366
Alignment:
| Q |
14 |
atattttaatttggagtagtttatttcacattgtccttatgaaagaataataatatcaccaaaggccacagcttatgattactcttctagaagatggaaa |
113 |
Q |
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| T |
37450652 |
atattttaatttggagtagtttatttcacattgtccttatgaaagaataataatatcaccaaaggccgcagcttatgattactcttctagaagatggaaa |
37450553 |
T |
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| Q |
114 |
ttaatttgagggtgtatggtttttgactgaatggttacgtgtaattttacaacttttgagaaatgctattatgaattatggttactcatggtagtttcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37450552 |
ttaatttgagggtgtatggtttttgactgaatggttacgtgtaattttacaacttttgagaaatgctattatgaattatggttactcatggtagtttcta |
37450453 |
T |
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| Q |
214 |
tttcttttaaatccc--nnnnnnnnnnggaacatatataaagacc-aaaaaatattttgtctaactaacaaaatccaaagaatatgt |
297 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37450452 |
tttcttttaaatcccaaaaaaaaaaaaggaacatatataaagaccaaaaaaatattttgtctaactaacaaaatccaaaaaatatgt |
37450366 |
T |
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