View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13882_low_1 (Length: 389)
Name: NF13882_low_1
Description: NF13882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13882_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 18169275 - 18169579
Alignment:
| Q |
13 |
catatttggatacacaatgtatttgacgaaatcacggtggtacactgtgattctaccaaactcactgtcaatccaaaaatgtacttagaattatgattga |
112 |
Q |
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| T |
18169275 |
catatttggatacacaatgtatttgacgaaatcacggtggtacactgtcattctaccaaacacactgtcaatccaaaaatgtacttagaattatgattga |
18169374 |
T |
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| Q |
113 |
agcaaattttaatcatgatatcacattatatatgttacctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatct |
212 |
Q |
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| T |
18169375 |
atcaagttttattcatgatatcacattatatatgttacctcaatttgttcattaagtttcctttctacttccatttgcatttctagagcatgagatatct |
18169474 |
T |
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| Q |
213 |
ccatgtttctggcaaaaatagaatttgaaaataaaat-tttagctaataccatttcaatctaaaattattctgtcgaaaaaatcataataaaatatttga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
18169475 |
ccatgtttctggcaaaaatagaatttgaaaataaaatctctagctaataccatttcaatctaaaattattttgtcgaaaaaaccttaataaaatatttga |
18169574 |
T |
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| Q |
312 |
taaaa |
316 |
Q |
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||||| |
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| T |
18169575 |
taaaa |
18169579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 18169583 - 18169677
Alignment:
| Q |
296 |
ataataaaatatttgataaaa-gctctaattattactcagtgatttgattatggtccccttgaatgatttctctgctgcattgttcatcacagct |
389 |
Q |
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| T |
18169583 |
ataataaaatatttgataaaaagctctaattattactcagtgatttgattatggtccccttgaccgatttctctgctgcattgttcatcccagct |
18169677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 31748688 - 31748739
Alignment:
| Q |
138 |
ttatatatgttacctcaatttgttcattaagtttcctttctacttccatttg |
189 |
Q |
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| T |
31748688 |
ttataaatgttacctcaatttgttcataaagtttcttttgtacttccatttg |
31748739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 31502192 - 31502156
Alignment:
| Q |
53 |
tacactgtgattctaccaaactcactgtcaatccaaa |
89 |
Q |
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| T |
31502192 |
tacaccgtgattctgccaaactcactgtcaatccaaa |
31502156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 32508668 - 32508620
Alignment:
| Q |
41 |
aaatcacggtggtacactgtgattctaccaaactcactgtcaatccaaa |
89 |
Q |
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| T |
32508668 |
aaatcacagtggcacactgtgattctaccatactcaccgtaaatccaaa |
32508620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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