View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13883_high_4 (Length: 248)
Name: NF13883_high_4
Description: NF13883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13883_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 33505850 - 33505649
Alignment:
| Q |
43 |
acattttccaataaaggaaaaatatgtactgatccaaaagattgaaagatatccatatctaaatacctacaataagggatacatcaattttaatgtaatt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33505850 |
acattttccaataaaggaaaaatatgtactgatccaaaagattgaaagatatccatatctaaatacctacaataagggatacatcaattttaatgtaatt |
33505751 |
T |
|
| Q |
143 |
tttcaataaatctaacattctatacagtcaaataattgtacttaaatataaattaaatctaaccacaaaatgttggattcatcggtgataaatgctaatc |
242 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
33505750 |
tttcaataaatctaacattctatacaatcaaatagttgtacttaaatataaattaaatctaaccacaaaatgttggattcatcggtgacaaaagctaatc |
33505651 |
T |
|
| Q |
243 |
ta |
244 |
Q |
| |
|
|| |
|
|
| T |
33505650 |
ta |
33505649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University