View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13883_high_5 (Length: 227)
Name: NF13883_high_5
Description: NF13883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13883_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 29930735 - 29930833
Alignment:
| Q |
17 |
aaacatgtgcataaataataatagattcaggttggttatggcatctcggacaatttggatctgagtcatgtttcttctatacctctcctcgttcgtgagg |
116 |
Q |
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| T |
29930735 |
aaacatgtgcataaata---atagattcaggttggttatggcatctcggacaatttggatctgattcatgtttcttctatacctctcctcgttcgtgagg |
29930831 |
T |
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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 29930882 - 29930967
Alignment:
| Q |
126 |
agaagatggtatgatttcacacaggaatatcaacaaattcatttaaacatggaggacgaatgctgtccataatttcgcaaaatatt |
211 |
Q |
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| T |
29930882 |
agaagatggtatgatttcacacaggaatatcaacaaattcatttaaacatggatgacgaatgctgtcgataatttcgcaaaatatt |
29930967 |
T |
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