View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13883_low_2 (Length: 388)
Name: NF13883_low_2
Description: NF13883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13883_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 3423501 - 3423827
Alignment:
| Q |
13 |
aatatcttcaaatgaaatattgcagaatcaattgccccatgctgccttggaagttcagattgaagaaggctttgagcatagaaagaaattccttgacccc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3423501 |
aatatcttcaaatgaaatattgcagaatcaattgccacatgctgccttggaagttcagattgaagaaggctttgagcatagaaagaaattccttgacccc |
3423600 |
T |
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| Q |
113 |
aagttcttcaatttctcactgaccttcaaacctgcaccatttcaataaaaacaataaaaatgagaaacacaagcatttcatttggtggttgattagaatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
3423601 |
aagttcttcaatttctcactgaccttcaaacctgcaccatttcaataaaaacaataaaaatgagaaacacaagcatttcatttggtgcttgattagcatg |
3423700 |
T |
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| Q |
213 |
gaaaatatttttgtatcatatacatgatgcatatgatagggacatcagaaaaattaatcgaattcatattgttgttatcgaccagtctaattatacatga |
312 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3423701 |
gaaaatatttttgtat--tatacatgatgaatatgatagggacatcagaaaaattaatcgaattcatattgttgttatcgaccagtctaattatacatga |
3423798 |
T |
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| Q |
313 |
atatgcaacaataaagatctataacatct |
341 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3423799 |
atatgcaacaataaagatctataacatct |
3423827 |
T |
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