View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13883_low_3 (Length: 344)
Name: NF13883_low_3
Description: NF13883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13883_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 14020486 - 14020708
Alignment:
| Q |
6 |
atgtgtaagatgatcccttagacaagtgttctttggggttgaaatgtgaacataaatacatttcaatt----ccaccggtcatgtgctgaaattccgtta |
101 |
Q |
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| T |
14020486 |
atgtgtaagatgatcccttagacaagtgttctttggggttgaaatgtgaacataaatacattttaattaattccaccggtcatgtgctgaaattccgtta |
14020585 |
T |
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| Q |
102 |
gacaaatacattttttgagctctgactgatctcaaagaggccgttctgatggtgtggtcggtgatatgagaaatgaactaagtgttcttttaggacacgg |
201 |
Q |
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| T |
14020586 |
gacaaatacattttttgagctctgattgatctcaaagaggccgttctgatcgtgtggtcggtgatatgagaaatgaactaagtgttcttttaggttacgg |
14020685 |
T |
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| Q |
202 |
atgatggagaactagctggaaca |
224 |
Q |
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| T |
14020686 |
atgatggagaactagctggaaca |
14020708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 14044783 - 14044853
Alignment:
| Q |
44 |
ttgaaatgtgaacataaatacatttcaattccaccggtcatgtgctgaaattccgttagacaaatacattt |
114 |
Q |
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| T |
14044783 |
ttgaaatgtgaacataaatacattttaattccagcagtcatgtgctgaaatttcgttagacaaatacattt |
14044853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 14044861 - 14044896
Alignment:
| Q |
198 |
acggatgatggagaactagctggaacataactgaat |
233 |
Q |
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| T |
14044861 |
acggatgatggagaactagctggaacataactgaat |
14044896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 13475624 - 13475593
Alignment:
| Q |
6 |
atgtgtaagatgatcccttagacaagtgttct |
37 |
Q |
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| T |
13475624 |
atgtgtaagatgatcccttagacaagtgttct |
13475593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 13475594 - 13475564
Alignment:
| Q |
88 |
ctgaaattccgttagacaaatacattttttg |
118 |
Q |
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| T |
13475594 |
ctgaaattccgttagacaaatacattttttg |
13475564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 14013119 - 14013156
Alignment:
| Q |
70 |
aattccaccggtcatgtgctgaaattccgttagacaaa |
107 |
Q |
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| T |
14013119 |
aattccacctgtcatgtgctgaaattcagttagacaaa |
14013156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 14044927 - 14044959
Alignment:
| Q |
238 |
aaagaaaatcagaacatatatgacattaaatgt |
270 |
Q |
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| T |
14044927 |
aaagaaaatcagaacatatatgacatttaatgt |
14044959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 10507808 - 10507706
Alignment:
| Q |
70 |
aattccaccggtcatgtgctgaaattccgttagacaaatacattttttgagctctgactgatctcaaagaggccgttctgatggtgtggtcggtgatatg |
169 |
Q |
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| T |
10507808 |
aattccacctgtcatgtgctgaaattcagatagacaaatacattttttgggttctaactgatctcgaggagaccgttctaatggtgtagtcagtgatatg |
10507709 |
T |
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| Q |
170 |
aga |
172 |
Q |
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||| |
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| T |
10507708 |
aga |
10507706 |
T |
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