View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13884_high_5 (Length: 255)
Name: NF13884_high_5
Description: NF13884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13884_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 26547626 - 26547762
Alignment:
| Q |
18 |
aacagcacattcattttcataatcagaagaaaattagatttcctaataaaacactgattctaaatatatcaactttcatttctaatccttctaaaaaatt |
117 |
Q |
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| T |
26547626 |
aacagcacattcattttcataatcagaagaaaattagttttcctaataaaacattgattctaaatatatcaactttcatttctaatccttctaaaaaatt |
26547725 |
T |
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| Q |
118 |
cattttaacttatgtccctctgatttgtctttcatag |
154 |
Q |
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| T |
26547726 |
cattttaacttatgtccctctgatttgtctttcatag |
26547762 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 26547800 - 26547852
Alignment:
| Q |
203 |
agaagcaaatgtttacgttatatgtttcaatctcacatgttattagttaagac |
255 |
Q |
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| T |
26547800 |
agaagcaaatgtttacgttatatgtttcaatctcacatgttattagttaagac |
26547852 |
T |
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