View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13884_high_6 (Length: 209)
Name: NF13884_high_6
Description: NF13884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13884_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 1141781 - 1141604
Alignment:
| Q |
18 |
tcatcactccaatagttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgt |
117 |
Q |
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| T |
1141781 |
tcatcactccaatagttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgt |
1141682 |
T |
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| Q |
118 |
ttcacttccactagtttagtatcatgttatgtagtttttgtataggcctacaattaaaaacatgtttgcttgtctctg |
195 |
Q |
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| T |
1141681 |
ttcacttccactagtttagtatcgtgttatgtagcttttgtataggcctagcattaaaaacatgtttgcttgtctctg |
1141604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 1137127 - 1136976
Alignment:
| Q |
18 |
tcatcactccaatagttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgt |
117 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| | |||| | ||||| |
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| T |
1137127 |
tcatcgctccaatagttctgcaccatcattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgt |
1137028 |
T |
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| Q |
118 |
ttcacttccactagtttagtatcatgttatgtagtttttgtataggcctaca |
169 |
Q |
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| T |
1137027 |
ttcacttccactagtttagtatcatgttatgtagcttttgtataggcctaca |
1136976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 1181336 - 1181267
Alignment:
| Q |
33 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
102 |
Q |
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| T |
1181336 |
ttctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttgg |
1181267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 1133551 - 1133436
Alignment:
| Q |
33 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
132 |
Q |
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| T |
1133551 |
ttctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagt |
1133452 |
T |
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| Q |
133 |
ttagtatcatgttatg |
148 |
Q |
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| T |
1133451 |
taagtatcatgttatg |
1133436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 1172088 - 1171978
Alignment:
| Q |
33 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcata-ttgtttcacttccactag |
131 |
Q |
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| T |
1172088 |
ttctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagtttttggctttaaacacatttgtttcacttctagtag |
1171989 |
T |
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| Q |
132 |
tttagtatcat |
142 |
Q |
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|||||| |||| |
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| T |
1171988 |
tttagtttcat |
1171978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 1148533 - 1148464
Alignment:
| Q |
33 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
102 |
Q |
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| T |
1148533 |
ttctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttgg |
1148464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 1160120 - 1160039
Alignment:
| Q |
64 |
gtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgtt |
145 |
Q |
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| T |
1160120 |
gtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtt |
1160039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 1164700 - 1164600
Alignment:
| Q |
33 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
132 |
Q |
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| T |
1164700 |
ttctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
1164601 |
T |
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| Q |
133 |
t |
133 |
Q |
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| T |
1164600 |
t |
1164600 |
T |
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