View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13884_low_1 (Length: 612)
Name: NF13884_low_1
Description: NF13884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13884_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 25 - 595
Target Start/End: Complemental strand, 18935114 - 18934543
Alignment:
| Q |
25 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagtt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18935114 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatattaacctctcttcatcatattgaagtt |
18935015 |
T |
|
| Q |
125 |
ttagcaaaaataccaggtcagggagatgatttaactt-gagtaaactaatgatagtaattttaggacttccaatagagatgaatggacgtcctattgagg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18935014 |
ttagcaaaaataccaggtcagggagatgatttaactttgagtaaactaatgatagtaattttaggacttccaatagagatgaatggacgtcctattgagg |
18934915 |
T |
|
| Q |
224 |
atgtccaacttttttccccttggttctttcctatttttgtatagctgagtattcttgcaagtatatgatgtgtaagagtaagaggaccctctctactctg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934914 |
atgtccaacttttttccccttggttctttcctatttttgtatagctgagtattcttgcaagtatatgatgtgtaagagtaagaggaccctctctactctg |
18934815 |
T |
|
| Q |
324 |
tcttttattattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaatta |
423 |
Q |
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| T |
18934814 |
tcttttattattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaatta |
18934715 |
T |
|
| Q |
424 |
attagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaata |
523 |
Q |
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| T |
18934714 |
attagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacgata |
18934615 |
T |
|
| Q |
524 |
cattcttgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagcaatataagatctttc |
595 |
Q |
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| T |
18934614 |
cattcttgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagcaatataagatctttc |
18934543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 376 - 566
Target Start/End: Original strand, 34716306 - 34716496
Alignment:
| Q |
376 |
tgaaccattgaagtgaactcctgtttattacttctaagagaaaaattaattagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttc |
475 |
Q |
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||||||| |||| |||||||| |||||||| ||| || || || |||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |
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| T |
34716306 |
tgaaccactgaactgaactccagtttattaattccaaaaggaagattaattagtatcgaaacgagatcataaagaaaactaaacttgtacttaggacttt |
34716405 |
T |
|
| Q |
476 |
ctccacactcgttccagattggaatattttaagtcaacagccacaatacattcttgatgaaagtcagctggtgtacattttaaaggaaatc |
566 |
Q |
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| T |
34716406 |
ttccacactcgttccagattggaatattttaaatcaacagcaactaaatgttcttgataaaagtctgctggtgtacattttaaagggaatc |
34716496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 330 - 580
Target Start/End: Original strand, 34725984 - 34726232
Alignment:
| Q |
330 |
attattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaattaattagt |
429 |
Q |
| |
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|||||||||||| ||| |||||||| ||||||||||| | | || |||| || |||| ||||||| ||| |||||||||| || || || ||| | |
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| T |
34725984 |
attattttgattgcctaataagaaatataattaagtataagaactatgaaacactgaactgaactcaagttagttacttctaaaaggaagat--attcat |
34726081 |
T |
|
| Q |
430 |
atcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaatacattct |
529 |
Q |
| |
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|||||||| |||||| ||||||||| |||||||||||||||||||| |||||||| |||| |||| |||||||||||| |||||||| || | | |||| |
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| T |
34726082 |
atcgaaactagatcatgaagaaaacaaaacttgtacctgggacttcttccacacttgttcaagatgggaatattttaaatcaacagcaactaaatgttct |
34726181 |
T |
|
| Q |
530 |
tgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagc |
580 |
Q |
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|||||||| || |||||||| | ||||||||||||||||||||||||||| |
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| T |
34726182 |
tgatgaaactcttctggtgtatactttaaaggaaatccatgccaacaaagc |
34726232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 34724969 - 34725076
Alignment:
| Q |
26 |
tagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagttt |
125 |
Q |
| |
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|||||||||| ||| |||||| | |||||||||||||||| | |||||||||||||||| ||| |||||| | |||||||||| ||||||||||||||| |
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| T |
34724969 |
tagatagaaataaagagaattaatgagagcaattattaaaaaacgactattagcctttcc-cctgacaaatgttaacctctctt-atcatattgaagttt |
34725066 |
T |
|
| Q |
126 |
tagcaaaaat |
135 |
Q |
| |
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|||| |||| |
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|
| T |
34725067 |
aagcataaat |
34725076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 463 - 580
Target Start/End: Original strand, 7887258 - 7887375
Alignment:
| Q |
463 |
tacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaatacattcttgatgaaagtcagctggtgtacattttaaagga |
562 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| || | | |||||||||||||| || ||| || |||||||||| |
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| T |
7887258 |
tacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactagagtatcttgatgaaagtcggcaggtatatattttaaaggg |
7887357 |
T |
|
| Q |
563 |
aatccatgccaacaaagc |
580 |
Q |
| |
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||||||||||||| |||| |
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|
| T |
7887358 |
aatccatgccaactaagc |
7887375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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