View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13884_low_3 (Length: 391)
Name: NF13884_low_3
Description: NF13884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13884_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 27847002 - 27847362
Alignment:
| Q |
13 |
aatatggctctacacacgtcggtttccaaggaaacacgcatatctcctttggacaatcagaattttgtttacatttacggcctgttgtaatnnnnnnnga |
112 |
Q |
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| T |
27847002 |
aatatggctctacacacgtaggtttccaaggaaacacacatatctcctttgaacaatcagaattttgtttacatttacggcctgttgtaatgaaaaaaga |
27847101 |
T |
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| Q |
113 |
gaat-aaagagtgttattcaaatgagagaaaatatatatgtatgaaataattaaggaaatttaaaacatccaaaaatggatcacctgggttgaaatttgg |
211 |
Q |
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| T |
27847102 |
gaatgaaagagtgttattcaaatgagagaaaatat-tatgtatgaagtaattaaggaaatttaaaacatccaaaaatggatcacctgggttgaaatttgg |
27847200 |
T |
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| Q |
212 |
gttgttcattgcaacaagaaatatggaaataaaaataaacttgactattctagtcatattttctccaatgtgcatttaagaattagaatatgatttgatc |
311 |
Q |
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| T |
27847201 |
gttgctcattgcaacaagaaatatggaaataaaaataaacttgactattctagtcatattttctccaatgtgcatttaagaattagaatatgatttgatc |
27847300 |
T |
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| Q |
312 |
actttatattttatagagcctatcttctccttacatacattaaataaattttagtgcttatg |
373 |
Q |
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| T |
27847301 |
actttatattttatagagcctatcttctccttacgtacattaaataaattttagtgcttatg |
27847362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 27835302 - 27835486
Alignment:
| Q |
13 |
aatatggctctacacacgtcggtttccaaggaaacacgcatatctcctttggacaatcagaattttgtttacatttacggcctgttgtaatnnnnnnnga |
112 |
Q |
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| T |
27835302 |
aatatgcctccacacacgttggtttccaaggaaacgtgcatatatattctggacaatcagaatcttgtttacatttgcgacctgttgtaatgaaaaaaaa |
27835401 |
T |
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| Q |
113 |
gaata-aagagtgttattcaaatgagagaaaatatatatgtatgaaataattaaggaaatttaaaacatccaaaaatggatcacct |
197 |
Q |
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| T |
27835402 |
gagtagaagagtgttattaaaatgagataaaatat-tatgtaggaggtaattaaggaaatttaaaacattcaaaaatggattacct |
27835486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 27835558 - 27835663
Alignment:
| Q |
266 |
catattttctccaatgtgcatttaagaattagaatatgatttgatcactttatattttataga--gcctatcttctccttacatacattaaataaatttt |
363 |
Q |
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| T |
27835558 |
catattttcttccatgtgcatgtaagaaataaaatatgattttatcaatttataatctatatatagcttatcttctccttacatacattaaatagatttt |
27835657 |
T |
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| Q |
364 |
agtgct |
369 |
Q |
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| T |
27835658 |
agtgct |
27835663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 27855325 - 27855407
Alignment:
| Q |
242 |
aaaaataaacttgactattctagtcatattttctccaatgtgcatttaagaattagaatatgatttgatcactttatatttta |
324 |
Q |
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| T |
27855325 |
aaaaaaaaacttgacaattttagccatattttctccaaagtgcatgtaagaaatagaatatgattttatcactttatagttta |
27855407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 28712019 - 28712093
Alignment:
| Q |
297 |
gaatatgatttgatcactttatattttatagagcctatcttctccttacatacattaaataaattttagtgctta |
371 |
Q |
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| T |
28712019 |
gaatatgtttttatcactttataatttataaagcttatcctcttcttacatacattaaatagcttttagtgctta |
28712093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 27855199 - 27855278
Alignment:
| Q |
117 |
aaagagtgttattcaaatgagagaaaatatatatgtatgaaataattaaggaaatttaaaacatccaaaaatggatcacct |
197 |
Q |
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| T |
27855199 |
aaagagtgttactcaaatgagataaaatat-tatatagaaagtaattaaggaaatttaaaatatccaaaaatcgattacct |
27855278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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