View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13884_low_8 (Length: 208)
Name: NF13884_low_8
Description: NF13884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13884_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 27847020 - 27846902
Alignment:
| Q |
3 |
acgtgtgtagagccatattttttgatgatccttataaaaagatataattattgtacatgtacgtgagcgatgtgccccctaagattatgctacaaaatac |
102 |
Q |
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| T |
27847020 |
acgtgtgtagagccatattttttgatgatccttataaaaagatataattattgtacatgtacgtgagcgatgtgccccccaagattacgctacaaaatac |
27846921 |
T |
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| Q |
103 |
aataatttgaattttatct |
121 |
Q |
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| T |
27846920 |
aataatttgaattttatct |
27846902 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 27846863 - 27846788
Alignment:
| Q |
119 |
tctaagatgagagtaatgaaacgaaataaggaataaaataatatcatttagattttctttttcttgttctctcata |
194 |
Q |
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| T |
27846863 |
tctaagatgagaggaatgaaacgaaataaggaataaaataatattatttagattttctttttcttgttctctcata |
27846788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 27854910 - 27854842
Alignment:
| Q |
123 |
agatgagagtaatgaaacgaaataaggaataaaataatatcatttagattttctttttcttgttctctc |
191 |
Q |
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| T |
27854910 |
agataagagtaatgaaacgaaataacgaataaaataatattaattagattttctttttcgcgttctctc |
27854842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 27855114 - 27855010
Alignment:
| Q |
1 |
cgacgtgtgtagagccatattttttgatgatccttataaaaagatataattattgtacatgtacgtgagcgatgtgccccctaagattatgctacaaaat |
100 |
Q |
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| T |
27855114 |
cgacatgtgtaaagccatattttcttatgatcaatcaacatagacataactattgtgcatgtacgtgagcgatgtgccccctaagattctgctacaaaat |
27855015 |
T |
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| Q |
101 |
acaat |
105 |
Q |
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|||| |
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| T |
27855014 |
tcaat |
27855010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 103135 - 103083
Alignment:
| Q |
119 |
tctaagatgagagtaatgaaacgaaataaggaataaaataatatcatttagat |
171 |
Q |
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| T |
103135 |
tctaagatgatggtaatcaaatgaaataagaaataaaataatattatttagat |
103083 |
T |
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