View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13885_high_10 (Length: 216)
Name: NF13885_high_10
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 28674215 - 28674410
Alignment:
| Q |
2 |
acatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgccta |
101 |
Q |
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| T |
28674215 |
acatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtattgtcataaagctaccgtccgtgtgctttgtagtgccta |
28674314 |
T |
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| Q |
102 |
tggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaagac |
197 |
Q |
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| T |
28674315 |
tggttaactctggctcagggcatggtgggtaatagtgacacaagagaaaaaacttttcagcaccacccatttctttaaggtgaaagcgattaagac |
28674410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 28648751 - 28648945
Alignment:
| Q |
1 |
tacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgcct |
100 |
Q |
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| T |
28648751 |
tacatcaatccattgattgttatgaagaacttctaagccaccaatatgatcttgcaaaagtattgtaataaagctaccatctgagtgcttgacagtgcca |
28648850 |
T |
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| Q |
101 |
atggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaag |
195 |
Q |
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| T |
28648851 |
atggttaactctggctcagggcatggtggacaataatgacatagatggaaaaaactttcagcagcacccatttctttaaggtgaaagcgattaag |
28648945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 28639445 - 28639638
Alignment:
| Q |
2 |
acatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgccta |
101 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| || || ||| ||||||||| || | |||||| |||||| | |
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| T |
28639445 |
acatcaatccattgattgtcatgaagaacttctaagccaccaatatgatcttgcaaaactattgtaataaagctagcatctgagtgcttgacagtgccaa |
28639544 |
T |
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| Q |
102 |
tggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaag |
195 |
Q |
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| T |
28639545 |
tggttaactctggctcagggcatggtggataataatgacatagatggaaaaaactttcagcagcacccatttctttaaggtgaaagcgattaag |
28639638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28670310 - 28670506
Alignment:
| Q |
1 |
tacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgcct |
100 |
Q |
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|||||||| ||| |||||||||||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||| || | |||||| |||||||| |
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| T |
28670310 |
tacatcaatccactgattgtcatgaagaatttgtaagccaccaatatgatcttgcaaaagtactgtaataaagctagcatctgagtgcttggtagtgcca |
28670409 |
T |
|
| Q |
101 |
atggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaagac |
197 |
Q |
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|| |||||||| ||||||||||||| ||| ||||| ||||| | | | | || |||||||| | |||||||||||||||||| || | ||||||| |
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| T |
28670410 |
atagttaactccggctcagggcatgctggataataatgacatagatgtacaaaactttcagcagcgcccatttctttaaggtgagagcggttaagac |
28670506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28690568 - 28690753
Alignment:
| Q |
1 |
tacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgcct |
100 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||| |||||| |||| ||||| || || ||| | |||| ||||| || ||| | || |
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| T |
28690568 |
tacatcaatccattgatcgtcatgaagaacttgtaagccgccaatatgatcttgcaaaagtatagttatgaagtcattgtctgtgtgattggtatttccc |
28690667 |
T |
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| Q |
101 |
atggttaactctggctcagggcatggtgggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaa |
186 |
Q |
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| T |
28690668 |
atagttaattcaggttcaggacatggagggtaatagtgacatagaacaatcaacccttcagcacaccccatttctttaaggtgaaa |
28690753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 49464341 - 49464447
Alignment:
| Q |
23 |
tgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgtccgtgtgctttgtagtgcctatggttaactctggctcagggc |
122 |
Q |
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| T |
49464341 |
tgaagaacttgaagaccaccaagttggtcttgtagaagtaatgtcatgaagttactatcagtatgctttgtagtgcccatagttaactcaggttcagggc |
49464440 |
T |
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| Q |
123 |
atggtgg |
129 |
Q |
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| T |
49464441 |
acggtgg |
49464447 |
T |
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