View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13885_high_2 (Length: 420)
Name: NF13885_high_2
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_high_2 |
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| [»] scaffold0916 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 46159909 - 46159679
Alignment:
| Q |
18 |
agcacgatcgtttgtttacgcagttaggccaattgtacctaccactgcgattatagagcatctataattttgtatatttatttaaatgtattagggttta |
117 |
Q |
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| T |
46159909 |
agcacgatcgtttgtttacgcagttaggccaattgtacctaccactgcgactatagagcatctataattttgtatatttatttaaatgtattagggttta |
46159810 |
T |
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| Q |
118 |
cagtgttacaagacatataaataatactgcaatctttctaaagcaagaagcgagaaagttacggttcggattacaacaatactctggagcagtactgcgg |
217 |
Q |
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| T |
46159809 |
cagtgttacaagacatataaataatactgcaatctttctaaagcaagaagcgagaaagttacggttcggattacaacaatactctggagcagtactgcgg |
46159710 |
T |
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| Q |
218 |
gggttgtcgccccagtaacaaacagtttgca |
248 |
Q |
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| T |
46159709 |
gggttgtcgcccccgtaacaaacagtttgca |
46159679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 243 - 408
Target Start/End: Complemental strand, 46159600 - 46159435
Alignment:
| Q |
243 |
tttgcaccactatgctagctcggctccccaggcctttgcacctcttttcagaacatgcataatcaatcatagataagtggaaacagaagcttcattttcc |
342 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
46159600 |
tttgcaccactatgctagctcagctccacaggcctttgcacctcttttctgaacatgcataatcaatcatagatgagttgaaacagaagcttcattttcc |
46159501 |
T |
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| Q |
343 |
tcattttatgtttgattttcagtatgttgtcctttgtgtatagatatgtttaacattgatttttca |
408 |
Q |
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| T |
46159500 |
tcattttatgtttgattttcagtatgttgtcctttgtgtatagatatgtttaacattgacttttca |
46159435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 46166770 - 46166653
Alignment:
| Q |
18 |
agcacgatcgtttgtttacgcagttaggccaattgtacctaccactgcgattatagagcatctataattttgtatatttatttaaatgtattagggttta |
117 |
Q |
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|||| ||||||||||||| | ||||||||||||||| |||||| || ||| |||||||||||||| |||| |||| ||| ||||||| ||||||||||| |
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| T |
46166770 |
agcatgatcgtttgtttatgtagttaggccaattgtgcctacctctccgaccatagagcatctatacttttctata-ttacttaaatgaattagggttta |
46166672 |
T |
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| Q |
118 |
cagtgttacaagacatata |
136 |
Q |
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| T |
46166671 |
tagcgttacaagacatata |
46166653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 46159634 - 46159593
Alignment:
| Q |
243 |
tttgcaccactatgctagctcggctccccaggcctttgcacc |
284 |
Q |
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| T |
46159634 |
tttgcaccactatgctagctcagctccccaggcctttgcacc |
46159593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 46166519 - 46166446
Alignment:
| Q |
253 |
tatgctagctcggctccccaggcctttgcacctcttttca-gaacatgcataatcaatcatagataagtggaaa |
325 |
Q |
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| T |
46166519 |
tatgctagctcagccccccatgcctttgcccctctttttatgcacatgcataattaatcatagatgagttgaaa |
46166446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0916 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0916
Description:
Target: scaffold0916; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 2484 - 2517
Alignment:
| Q |
144 |
ctgcaatctttctaaagcaagaagcgagaaagtt |
177 |
Q |
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| T |
2484 |
ctgcaatctttctaaagcaagaagcgagaaagtt |
2517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 48984 - 49017
Alignment:
| Q |
144 |
ctgcaatctttctaaagcaagaagcgagaaagtt |
177 |
Q |
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| T |
48984 |
ctgcaatctttctaaagcaagaagcgagaaagtt |
49017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 35037692 - 35037580
Alignment:
| Q |
23 |
gatcgtttgtttacgcagttaggccaattgtacctaccactgcgattatagagcatctataattttgtatatttatttaaatgtattagggtttacagtg |
122 |
Q |
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| T |
35037692 |
gatcgtttgtttacgcaatttggccaattgtgtctgcctctgtgactatagagtagctataattccgaatatt-acttgagtgtattagggtttacaatg |
35037594 |
T |
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| Q |
123 |
ttacaagacatata |
136 |
Q |
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||||||| |||||| |
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| T |
35037593 |
ttacaagccatata |
35037580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 14958119 - 14958064
Alignment:
| Q |
28 |
tttgtttacgcagttaggccaattgtacctaccactgcgattatagagcatctata |
83 |
Q |
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| T |
14958119 |
tttgttaacacagttcggccaattgtgcctacctctgcgattatagagcagctata |
14958064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 4920129 - 4920206
Alignment:
| Q |
18 |
agcacgatcgtttgtttacgcagttaggccaattgtacctaccactgcgattatagagcatctataattttgtatatt |
95 |
Q |
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| T |
4920129 |
agcatgatcggttgtttatgcagttcggtcaattatgcctacctctacgactatagagcagctatacttttgtatatt |
4920206 |
T |
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