View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13885_high_4 (Length: 373)
Name: NF13885_high_4
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 6411007 - 6411355
Alignment:
| Q |
19 |
gttccttcgttgtgcattacattttctacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatg |
118 |
Q |
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| T |
6411007 |
gttccttcgttgtgcattacattttatacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatg |
6411106 |
T |
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| Q |
119 |
tttactaactcaatactatgtttgttagcgtatctgctacctgctgtacaaatcctgttgtggcagtagttagaacttagaactcaatcagaacctcgtc |
218 |
Q |
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| T |
6411107 |
tttactaactcaatattatgtttgttagcgtatctgctacctgctgcacaaatcctgttgtggcagtggttagaacttagaactcaatcagaacctcgtc |
6411206 |
T |
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| Q |
219 |
taagtcttgcttggtcatcacaatatatcctatctgtgataatgattccctaggctccctccct---ttcatttcatcatctgctttgacattattacta |
315 |
Q |
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| T |
6411207 |
taagtcttgcttggtcatcacaatatatcatatc---------gattccctaggctccctccctttcttcatttcatcatctgctttgacattattacta |
6411297 |
T |
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| Q |
316 |
atcgttttcatgtgcgtcagttgaatctcacctctctatatctcgatactcatctgtt |
373 |
Q |
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| T |
6411298 |
atcgttttcatgtcggtcagttgaatctcacctctctatatctcgatactcatctgtt |
6411355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 4967859 - 4967698
Alignment:
| Q |
23 |
cttcgttgtgcattacattttctacaacc---tacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgt |
119 |
Q |
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| T |
4967859 |
cttcattgtgcattacattttatacaacccataataatcatactttgcattaggtggttagtggattggttttctaagattggaataagtattcagatgt |
4967760 |
T |
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| Q |
120 |
ttactaactcaatactatgtttgttagcgtatctgctacctgctgtacaaatcctgttgtgg |
181 |
Q |
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| T |
4967759 |
atacccagtcaatagtatgtttgttagcatatctgctacctgctgcgcaaatcttgttgtgg |
4967698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 9819413 - 9819270
Alignment:
| Q |
19 |
gttccttcgttgtgcattacattttctacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatg |
118 |
Q |
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| T |
9819413 |
gttcctttgttgtgcattacattttatacagtccacgaccatgcattgcgctagatggttagttgtttggttttctgagattggaataagtattttgatg |
9819314 |
T |
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| Q |
119 |
tttactaactcaatactatgtttgttagcgtatctgctacctgc |
162 |
Q |
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| T |
9819313 |
tatgcctagtcaatagtatgttttttagcatatctactagctgc |
9819270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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