View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13885_low_1 (Length: 619)
Name: NF13885_low_1
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 9 - 603
Target Start/End: Original strand, 31706488 - 31707082
Alignment:
| Q |
9 |
gaaatgaatgaaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtata |
108 |
Q |
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| T |
31706488 |
gaaatgaatgcaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtata |
31706587 |
T |
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| Q |
109 |
taaacagaaactattttcgagtgaagatcacctacaaatatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtg |
208 |
Q |
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| T |
31706588 |
taaacagaaactattttccagtgaagatcacctacatacatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtg |
31706687 |
T |
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| Q |
209 |
tctcaaaactcgatttattaaaattacctttgcgagttcgtttgagtaattcagttcctctagcaagaagttcttggctgcaagtacttagaaaattatc |
308 |
Q |
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| T |
31706688 |
tctcaaaactcgatttattaaaattacctttgcgagttcgtttgagtaattcagttcctctagcaagaagttcttggctgcaagtactcagaaaattatc |
31706787 |
T |
|
| Q |
309 |
tgcattgataacctctcctccactttcactagtgctagaactactgttgttattacctttaccaccacatattccaattcctatgcttttctcaagtggt |
408 |
Q |
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| T |
31706788 |
tgcattgataacctctcctccactttcactagtgctagaactactgttgttattacctttaccaccacatattccaattcctatgcttttctcaagtggt |
31706887 |
T |
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| Q |
409 |
gtcactgcagtactaatattccacatctctttcaatgctcttgctttcaatgttgctgccccccttagagctgcatatatcaaggaaggaccacattagc |
508 |
Q |
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| T |
31706888 |
gtcactgcagtactaatattccacatctctttcaatgctcttgctttcaatgttgctgccccccttagagctgcatatatcaaggaaggaccacattagc |
31706987 |
T |
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| Q |
509 |
aatataataatgacaggagaaaaaatcatactacaaaacaggagtattcattcccctgacaaaccatgtgtaacatgaacattccttattagttg |
603 |
Q |
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| T |
31706988 |
aatataataaggacaggagaaaaaatcatactacaaaacaggagtattcattcccctgacaaaccatgtgtaacatgaacattccttattagttg |
31707082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 38269485 - 38269424
Alignment:
| Q |
80 |
aaaaaattacctggccggttcgatgtatataaacagaaactattttcgagtgaagatcacct |
141 |
Q |
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| T |
38269485 |
aaaaatttacatgtcccgttcgatgtatgtaaacagaaactattttccagtgtagatcacct |
38269424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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