View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13885_low_10 (Length: 231)

Name: NF13885_low_10
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13885_low_10
NF13885_low_10
[»] chr4 (4 HSPs)
chr4 (11-215)||(40414442-40414643)
chr4 (62-187)||(24412778-24412903)
chr4 (66-183)||(24412905-24413022)
chr4 (137-187)||(26905348-26905398)
[»] chr8 (2 HSPs)
chr8 (31-187)||(44912610-44912765)
chr8 (31-187)||(44913593-44913748)
[»] chr6 (1 HSPs)
chr6 (61-145)||(5437824-5437908)
[»] chr1 (3 HSPs)
chr1 (51-145)||(30647482-30647575)
chr1 (51-145)||(30642664-30642758)
chr1 (72-135)||(51866493-51866554)
[»] chr5 (2 HSPs)
chr5 (11-85)||(43385470-43385543)
chr5 (95-135)||(30047501-30047541)
[»] chr3 (1 HSPs)
chr3 (106-177)||(22931763-22931834)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 40414442 - 40414643
Alignment:
Q  11 agagaagaagtagataattgttgttgtaaacttacgagttttcattatcagtgaaaagtgattacaacatgccttatataagaggcttatttacattgct 110  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40414442 agagaagaagtagagaattgt---tgtaaacttacgagttttcattattagtgaaaagtgattacaacatgccttatataagaggcttatttacattgct 40414538  T
Q  111 tgcttagtaagctatctaaacaaacataacaaacttagttagattaactaactaacttgtaataaacctttatacccttaccataaacttcacaactctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40414539 tgcttagtaagctatctaaacaaacataacaaacttagttagattaactaactaacttgtaataaacctttatacccttaccataaacttcacaactctt 40414638  T
Q  211 ctttg 215  Q
    |||||    
T  40414639 ctttg 40414643  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 24412778 - 24412903
Alignment:
Q  62 tgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaacttagttagattaactaa 161  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  24412778 tgaaaagtgattacaacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataa 24412877  T
Q  162 ctaacttgtaataaacctttataccc 187  Q
    || |||||||| |||| |||||||||    
T  24412878 cttacttgtaacaaacttttataccc 24412903  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 24412905 - 24413022
Alignment:
Q  66 aagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaacttagttagattaactaactaa 165  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||||||| ||||||| ||||||||    
T  24412905 aagtgattactacatgccttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaacttagctagattacctaactaa 24413004  T
Q  166 cttgtaataaacctttat 183  Q
    ||||||| |||| |||||    
T  24413005 cttgtaacaaacttttat 24413022  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 26905398 - 26905348
Alignment:
Q  137 taacaaacttagttagattaactaactaacttgtaataaacctttataccc 187  Q
    |||||||||||| ||||||  ||||||||||||||| |||| |||||||||    
T  26905398 taacaaacttagctagattttctaactaacttgtaacaaacttttataccc 26905348  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 44912610 - 44912765
Alignment:
Q  31 ttgttgtaaacttacgagttttcattatcagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaa 130  Q
    ||||||||| |||| ||||||| ||||   ||||||||||| |||| |||| ||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  44912610 ttgttgtaatcttatgagtttt-attaattgtgaaaagtgactacatcatgtcttatataagaagcttatttacatcgcttgtttagtaagctatctaaa 44912708  T
Q  131 caaacataacaaacttagttagattaactaactaacttgtaataaacctttataccc 187  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||    
T  44912709 caaacataacaaacttagctagattacctaactaacttgtaacaaacttttataccc 44912765  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 44913593 - 44913748
Alignment:
Q  31 ttgttgtaaacttacgagttttcattatcagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaa 130  Q
    ||||||||| |||| |||||| |||||   |||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  44913593 ttgttgtaatcttatgagttt-cattagttgtgaaaagtgattacatcatgccttatataaaaagcttattcacattgcttgcttagtaagctatctaaa 44913691  T
Q  131 caaacataacaaacttagttagattaactaactaacttgtaataaacctttataccc 187  Q
    |||||||||||||  ||| ||||||| ||||||||||||||| |||| | |||||||    
T  44913692 caaacataacaaatatagctagattacctaactaacttgtaacaaacttctataccc 44913748  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 5437908 - 5437824
Alignment:
Q  61 gtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaact 145  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5437908 gtgaaaaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaacaaacataacaaact 5437824  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 30647575 - 30647482
Alignment:
Q  51 ttcattatcagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaact 145  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  30647575 ttcattagtagtgaaaagtgattacaacatgccttatataagaggcttatttaca-tgcttggttagtaagctatctaaacaaacataaccaact 30647482  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 30642758 - 30642664
Alignment:
Q  51 ttcattatcagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaact 145  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||    
T  30642758 ttcattagtagtgaaaagtgattacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaact 30642664  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 51866493 - 51866554
Alignment:
Q  72 ttacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaac 135  Q
    ||||||||||||||||||| ||  |||||| || ||||||| ||||||||  ||||||||||||    
T  51866493 ttacaacatgccttatatagga--cttattcactttgcttgtttagtaagtaatctaaacaaac 51866554  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 43385470 - 43385543
Alignment:
Q  11 agagaagaagtagataattgttgttgtaaacttacgagttttcattatcagtgaaaagtgattacaacatgcctt 85  Q
    |||||||||||||| |||| |||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||    
T  43385470 agagaagaagtagagaattattgttgtaaacttatgag-tttcattagtagtgaaaagtgattacaacatgcctt 43385543  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 30047541 - 30047501
Alignment:
Q  95 gcttatttacattgcttgcttagtaagctatctaaacaaac 135  Q
    |||||||||||| ||||||||||||||| ||| ||||||||    
T  30047541 gcttatttacatagcttgcttagtaagcaatcaaaacaaac 30047501  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 22931763 - 22931834
Alignment:
Q  106 ttgcttgcttagtaagctatctaaacaaacataacaaacttagttagattaactaactaacttgtaataaac 177  Q
    ||||||||||||||||| |||||||||||| |||||||||||| || || | || ||| |||||||| ||||    
T  22931763 ttgcttgcttagtaagcaatctaaacaaacttaacaaacttagctacatcacctgactcacttgtaacaaac 22931834  T

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