View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13885_low_2 (Length: 590)
Name: NF13885_low_2
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 40360174 - 40360521
Alignment:
| Q |
17 |
acaatctgaggtacctatttgaaacaaagaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaataattgcggttgt |
116 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40360174 |
acaatctcaggtacctatttgaaacaaggaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaataattgcggttgt |
40360273 |
T |
|
| Q |
117 |
ggattgcaatttaaaacaagattttaatagaaagtt----gattacctcgtttgagatttttgttttccttgctgcaacactttgaacaacactgtcagc |
212 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40360274 |
ggattgcaatttaaaacaatattttaagagaaagttaattgattacctcgtttgagatttttgttttccttgctgcaacactttgaacaacactgtcagc |
40360373 |
T |
|
| Q |
213 |
actacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgcaataaattctgaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40360374 |
actacgtgatttttggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgcaataaattctgaaa |
40360473 |
T |
|
| Q |
313 |
ctcggagatccttggtataaaaatcttccgacttcgtcgtcgtcgtcg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
40360474 |
ctcggagatccttggtataaaaatcttccaacttcatcgtcgtcgtcg |
40360521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 471 - 586
Target Start/End: Original strand, 40360641 - 40360756
Alignment:
| Q |
471 |
cactgtccctttaatgtttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatcaatgtctttgtta |
570 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40360641 |
cactgtcccttcaatatttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatcaatgtctttgtta |
40360740 |
T |
|
| Q |
571 |
atgttaatcttctcct |
586 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
40360741 |
atgttcatcttctcct |
40360756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University