View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13885_low_4 (Length: 380)

Name: NF13885_low_4
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13885_low_4
NF13885_low_4
[»] chr1 (13 HSPs)
chr1 (1-361)||(535262-535620)
chr1 (18-108)||(31091948-31092038)
chr1 (234-299)||(555923-555988)
chr1 (18-99)||(24614916-24614997)
chr1 (18-108)||(33719484-33719574)
chr1 (29-103)||(50551101-50551175)
chr1 (29-102)||(39193502-39193575)
chr1 (15-108)||(41198391-41198484)
chr1 (29-108)||(35671995-35672074)
chr1 (20-68)||(5559557-5559605)
chr1 (18-70)||(11619814-11619866)
chr1 (20-68)||(14461875-14461923)
chr1 (40-108)||(28655704-28655771)
[»] chr8 (11 HSPs)
chr8 (29-108)||(3289854-3289933)
chr8 (18-108)||(3773949-3774039)
chr8 (18-108)||(4267479-4267569)
chr8 (40-108)||(42199981-42200049)
chr8 (20-108)||(6345429-6345517)
chr8 (40-108)||(12523114-12523182)
chr8 (20-108)||(26721042-26721130)
chr8 (20-108)||(37948829-37948917)
chr8 (20-68)||(1265279-1265327)
chr8 (20-68)||(31127145-31127193)
chr8 (20-68)||(43619923-43619971)
[»] chr5 (10 HSPs)
chr5 (18-108)||(27110779-27110869)
chr5 (18-108)||(41061359-41061449)
chr5 (29-108)||(1495781-1495860)
chr5 (18-108)||(10415898-10415988)
chr5 (27-108)||(14718297-14718378)
chr5 (20-68)||(13554942-13554990)
chr5 (40-108)||(33746143-33746211)
chr5 (20-68)||(13521651-13521699)
chr5 (29-69)||(35449537-35449577)
chr5 (20-68)||(40987514-40987562)
[»] chr4 (14 HSPs)
chr4 (18-108)||(34277072-34277162)
chr4 (18-108)||(40436566-40436656)
chr4 (18-108)||(48315367-48315457)
chr4 (29-102)||(42430124-42430197)
chr4 (18-103)||(47996868-47996953)
chr4 (29-108)||(20580721-20580800)
chr4 (18-108)||(42414433-42414521)
chr4 (18-64)||(6183973-6184019)
chr4 (29-75)||(47462754-47462800)
chr4 (18-99)||(40336089-40336170)
chr4 (20-108)||(24575041-24575129)
chr4 (20-68)||(7700455-7700503)
chr4 (20-68)||(18780813-18780861)
chr4 (29-77)||(31568029-31568077)
[»] chr3 (7 HSPs)
chr3 (18-108)||(1030595-1030685)
chr3 (29-108)||(19997509-19997588)
chr3 (42-97)||(29283146-29283201)
chr3 (18-108)||(48973624-48973714)
chr3 (27-108)||(16309022-16309103)
chr3 (27-108)||(18490016-18490097)
chr3 (20-68)||(37282531-37282579)
[»] chr2 (6 HSPs)
chr2 (18-108)||(21352202-21352292)
chr2 (29-102)||(22596210-22596283)
chr2 (40-108)||(42295715-42295783)
chr2 (29-108)||(15441259-15441338)
chr2 (28-108)||(7418252-7418332)
chr2 (20-68)||(16672187-16672235)
[»] chr6 (7 HSPs)
chr6 (15-108)||(3901019-3901112)
chr6 (40-102)||(13531430-13531492)
chr6 (40-108)||(10484296-10484364)
chr6 (18-108)||(10386270-10386360)
chr6 (20-68)||(7608166-7608214)
chr6 (243-279)||(8577755-8577791)
chr6 (20-68)||(16705251-16705299)
[»] chr7 (6 HSPs)
chr7 (29-108)||(31280075-31280154)
chr7 (18-108)||(29987878-29987968)
chr7 (29-102)||(36582418-36582491)
chr7 (18-108)||(6714093-6714183)
chr7 (18-106)||(8937671-8937759)
chr7 (20-68)||(27392755-27392803)
[»] scaffold0717 (1 HSPs)
scaffold0717 (20-108)||(5619-5707)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 535262 - 535620
Alignment:
Q  1 gcaatatataacacaaaatatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatata 100  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  535262 gcaatatataacacaaaataagaagtagtaataatatgaattaaattaatgaaatatttaagattaaaaatcaaccatcaagataatgatgcaatatata 535361  T
Q  101 atattaatnnnnnnnntattaaaatttacttttacggttcagtttannnnnnnnaaaaatgatctgaaatctaatccaatgttaagtgtcaataaaattg 200  Q
    ||||||||        ||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  535362 atattaataaaaaaa-tattaaaatttacttttacggttcattttatttttttaaaaaatgatctgaaatctaatccaatgttaagtgtcaataaaattg 535460  T
Q  201 tcaaggtttaatatgaatgtctaattagataagtacaatggtaagaaacatattaaatcttgaccattgtattggtttattattaaatcaataattattt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  535461 tcaaggtttaatatgaatgtctaattagataagtgcaatggtaagaaacatattaaatcttgaccattgtattggtttattattaaatcaataattattt 535560  T
Q  301 ttaatttcacaataaatgattcaatcttttaagtttaccatgttaactgtcacctagtttg 361  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  535561 ttaatttcacaat-aatgattcaatcttttaagtttaccatgttaactgtcacctagtttg 535620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 31091948 - 31092038
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||| | ||| ||||| |||||||| |||||| ||||    
T  31091948 atatgaagtaataataatataaattaaattagtgcaatatataagattaaaaatcaacaagcaacataataatgcaatagataatactaat 31092038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 555923 - 555988
Alignment:
Q  234 tacaatggtaagaaacatattaaatcttgaccattgtattggtttattattaaatcaataattatt 299  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||    
T  555923 tacaatggtaagaaacatatgaaatcttgatcattgtatttgtttgttattaaatcaataattatt 555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24614997 - 24614916
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatat 99  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| |||||||||||    
T  24614997 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatat 24614916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 33719484 - 33719574
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | | |||||||  ||||||||| |||||||| |||||||||||| | || | ||| ||||| ||||||||||||||| ||||    
T  33719484 atatgaagtaatgataatatagattaaattaatgcaatatataagattaaaaaccgacaagcaacataataatgcaatatataatactaat 33719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 50551175 - 50551101
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataata 103  Q
    ||||||||| ||||||| ||||||||||| |||||| |||||  ||| | ||| |||||||| ||||||||||||    
T  50551175 taataatataaattaaactagtgcaatatataagataaaaaactaacaaacaacataatgatacaatatataata 50551101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 39193502 - 39193575
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataat 102  Q
    |||||||||  ||||||||||| |||||| |||||||||||| | || | ||| ||||| ||||||||||||||    
T  39193502 taataatatagattaaattagtacaatatataagattaaaaacctacgagcaacataataatgcaatatataat 39193575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 41198391 - 41198484
Alignment:
Q  15 aaaatatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||| |||||| ||||||||||   |||| ||| || |||||| ||||||||||| | ||| ||||| ||||| ||||||||||||||| ||||    
T  41198391 aaaacatgaagtagtaataataaagattatattggtacaatatataagattaaaatttaacaatcaacataataatgcaatatataatactaat 41198484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 35671995 - 35672074
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  ||||||| |||||||||| ||||||||||| | ||| |  || ||||| ||||||||||||||| ||||    
T  35671995 taataatatagattaaataagtgcaatatataagattaaaatttaacaagtaacataataatgcaatatataatactaat 35672074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5559605 - 5559557
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  5559605 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 5559557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 11619814 - 11619866
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaa 70  Q
    |||||||| | |||||||||  ||||||||| |||||||| ||||||||||||    
T  11619814 atatgaagtaataataatatagattaaattaatgcaatatataagattaaaaa 11619866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 14461923 - 14461875
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  14461923 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 14461875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 28655771 - 28655704
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||||||||| |||||||||||| |||  | ||| ||||| ||| ||||||||||| ||||    
T  28655771 attaaattagtgcaatatataagattaaaaaccaa-tagcaacataataatgtaatatataatactaat 28655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 3289933 - 3289854
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||| ||||    
T  3289933 taataatatagattaaattagtgcaatatataagattaaaaatcaactagcaacataataatgcaatatataatactaat 3289854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 3774039 - 3773949
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  3774039 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 3773949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 4267569 - 4267479
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  4267569 atatgaagtaataataatatagattaaattagtgcaatatgtaagattaaaatttaacaaacaacataataatgcaatatataatactaat 4267479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 42199981 - 42200049
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||||||||| |||||||||||| |||| | ||| ||||| ||||||||||||||| ||||    
T  42199981 attaaattagtgcaatatataagattaaaaaccaacaagcaacataataatgcaatatataatactaat 42200049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 6345517 - 6345429
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||| |||||  | ||| ||| |  |||||||||||||| ||||    
T  6345517 atgaagtagtaataatatagattaaattaatgcaatatataagattaaatatcaataagcaatatattagtgcaatatataatactaat 6345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 12523114 - 12523182
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||||||||| ||||||||||||  ||  | ||| ||||| ||||||||||||||| ||||    
T  12523114 attaaattagtgcaatatataagattaaaaactaataaacaacataataatgcaatatataatactaat 12523182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 26721042 - 26721130
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||| |||||  | ||| ||| |  |||||||||||||| ||||    
T  26721042 atgaagtagtaataatatagattaaattaatgcaatatataagattaaatatcaataagcaatatattagtgcaatatataatactaat 26721130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 37948829 - 37948917
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||| |||||  | ||| ||| |  |||||||||||||| ||||    
T  37948829 atgaagtagtaataatatagattaaattaatgcaatatataagattaaatatcaataagcaatatattagtgcaatatataatactaat 37948917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 1265327 - 1265279
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  1265327 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 1265279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 31127145 - 31127193
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  31127145 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 31127193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 43619923 - 43619971
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  43619923 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 43619971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 27110869 - 27110779
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  27110869 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 27110779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 41061449 - 41061359
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  41061449 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 41061359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 1495781 - 1495860
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  |||||||||||||||||| || |||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  1495781 taataatatagattaaattagtgcaatatatatgattaaaatttaacaagcaacataataatgcaatatataatactaat 1495860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 10415988 - 10415898
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | ||||| |||  ||||||||| | |||||| |||||||||||| |||| | ||| ||||| ||||||||||||||| ||||    
T  10415988 atatgaagtaataatagtatagattaaattattacaatatataagattaaaaaccaacaagcaacataataatgcaatatataatactaat 10415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 14718378 - 14718297
Alignment:
Q  27 agtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||  |||||||||||  ||||| ||| |||||||| |||| ||||| ||||| ||||||||| ||||| ||||    
T  14718378 agtaataatatagattaaattagtagaatatataatattaaaaaccaacaatcaacataataatgcaatatgtaatactaat 14718297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 13554990 - 13554942
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  13554990 atgaagtagtaataatataaattaaattaatgcaatatataagattaaa 13554942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 33746143 - 33746211
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||| ||||| ||||||||||||  ||| | ||| ||||| |||||||||||| |||||||    
T  33746143 attaaattagtgtaatatataagattaaaaactaacaagcaacataataatgcaatatatactattaat 33746211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 13521699 - 13521651
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  13521699 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 13521651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 35449537 - 35449577
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaa 69  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  35449537 taataatatagattaaattagtgcaatatataagattaaaa 35449577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 40987562 - 40987514
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  40987562 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 40987514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 34277162 - 34277072
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  34277162 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 34277072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 40436656 - 40436566
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  ||||||||||| |||||| |||||||||||| |||| | ||| ||||| ||||||||||||||| ||||    
T  40436656 atatgaagtaataataatatagattaaattagtccaatatataagattaaaaaccaacaagcaacataataatgcaatatataatactaat 40436566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 48315367 - 48315457
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| |||||||||||  |||||||||||| ||||| ||||| |||||| |||| | ||| ||||| ||||||||||||||| ||||    
T  48315367 atatgaagtagtaataatatagattaaattagtgaaatatataagaataaaaaccaacaagcaacataataatgcaatatataatactaat 48315457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 42430197 - 42430124
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataat 102  Q
    |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||    
T  42430197 taataatatagattaaattagtgcaatatataagattaaaatttaacaagcaacataataatgcaatatataat 42430124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 47996868 - 47996953
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataata 103  Q
    |||||||| | |||||||||  ||||||||| || ||||| |||||||||||| |||| | ||| ||||| |||||||||||||||    
T  47996868 atatgaagtaataataatatagattaaattaatgtaatatataagattaaaaaccaacaagcaacataataatgcaatatataata 47996953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 20580800 - 20580721
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  ||||||||| |||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  20580800 taataatatagattaaattactgcaatatataagattaaaagttaacaagcaacataataatgcaatatataatactaat 20580721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 42414433 - 42414521
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||  ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  42414433 atatgaagtaataataatatagattaaattagtgcaata--taagattaaaatttaacaaacaacataataatgcaatatataatactaat 42414521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 6183973 - 6184019
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagat 64  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||||    
T  6183973 atatgaagtaataataatataaattaaattagtgcaatatttaagat 6184019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 47462754 - 47462800
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaac 75  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||    
T  47462754 taataatatcgattaaattagtgcaatatataagattaaaaatcaac 47462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 40336089 - 40336170
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatat 99  Q
    |||||||| | ||||| ||| ||||||||||||||||||| ||||||| |||| |||| | ||| ||||| |||||| ||||    
T  40336089 atatgaagtaataatagtataaattaaattagtgcaatatataagattgaaaaccaacaagcaacataataatgcaacatat 40336170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 24575041 - 24575129
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| |||||||||||  ||||||||| |||||||| |||||||||| |||||  | ||| ||| |  |||||||||||||| ||||    
T  24575041 atgaagtagtaataatatagattaaattaatgcaatatataagattaaatatcaataagcaatatattagtgcaatatataatactaat 24575129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 7700503 - 7700455
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  7700503 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 7700455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 18780813 - 18780861
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  18780813 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 18780861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 31568029 - 31568077
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaacca 77  Q
    |||||||||  ||||||||||||||||||  ||||||||||| ||||||    
T  31568029 taataatatagattaaattagtgcaatatagaagattaaaaaccaacca 31568077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 1030685 - 1030595
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  1030685 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 1030595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 19997588 - 19997509
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  |||||||||||| ||||| ||||||||||||| ||| | ||| ||||| ||||| ||||||||| ||||    
T  19997588 taataatatagattaaattagtgaaatatataagattaaaaattaacaagcaacataataatgcattatataatactaat 19997509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 29283201 - 29283146
Alignment:
Q  42 taaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatat 97  Q
    |||||||||||||||| |||||||||||| |||| | ||| ||||| |||||||||    
T  29283201 taaattagtgcaatatataagattaaaaaccaacaagcaacataataatgcaatat 29283146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 48973624 - 48973714
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| |||||||||||  ||||||||| |||| ||| |||||||||| | |||  | ||| ||| | ||||||||||||||| ||||    
T  48973624 atatgaagtagtaataatatagattaaattaatgcagtatataagattaaataccaataagcaatatattaatgcaatatataatactaat 48973714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 16309103 - 16309022
Alignment:
Q  27 agtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||  ||||||||| | || ||| ||||||||||||||||| | ||| ||| |  |||||||||||||| ||||    
T  16309103 agtaataatattcattaaattaatacagtatataagattaaaaatcaacaagcaatatattactgcaatatataatactaat 16309022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 18490097 - 18490016
Alignment:
Q  27 agtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||  ||||||||| | || ||| ||||||||||||||||| | ||| ||| |  |||||||||||||| ||||    
T  18490097 agtaataatattcattaaattaatacagtatataagattaaaaatcaacaagcaatatattactgcaatatataatactaat 18490016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 37282531 - 37282579
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  37282531 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 37282579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 21352202 - 21352292
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  21352202 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatttaacaaacaacataataatgcaatatataatactaat 21352292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 22596283 - 22596210
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataat 102  Q
    |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||    
T  22596283 taataatatagattaaattagtgcaatatataagattaaaatttaacaagcaacataataatgcaatatataat 22596210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 42295715 - 42295783
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  42295715 attaaattagtgcaatatataagattaaaatttaacaagcaatataataatgcaatatataatactaat 42295783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 15441338 - 15441259
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  |||||||||||| ||||  |||||||||||| |||| |  || |||||||| |||||||||||| ||||    
T  15441338 taataatatatattaaattagtgtaatacataagattaaaaaccaacaagtaacataatgattcaatatataatactaat 15441259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 7418332 - 7418252
Alignment:
Q  28 gtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    ||||||||||  ||||||| | |||||||| |||||||||||| || | | ||| ||||| ||||||||||| ||| ||||    
T  7418332 gtaataatatagattaaataaatgcaatatataagattaaaaaccagcaagcaatataataatgcaatatatgatactaat 7418252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 16672235 - 16672187
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  16672235 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 16672187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 3901019 - 3901112
Alignment:
Q  15 aaaatatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    ||||||||||  | |||||||||  |||||||||||||||||| |||||||||||| |||| | ||| ||||| || |||||||||||| ||||    
T  3901019 aaaatatgaaataataataatatatattaaattagtgcaatatataagattaaaaaccaacgagcaacataataattcaatatataatactaat 3901112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 13531492 - 13531430
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataat 102  Q
    |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||    
T  13531492 attaaattagtgcaatatataagattaaaatttaacaaccaatataataatgcaatatataat 13531430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 10484296 - 10484364
Alignment:
Q  40 attaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||||||||||| || |||| |||| |||| | ||| ||| | ||||||||||||||||||||    
T  10484296 attaaattagtgcaatatatatgatttaaaaccaacaagcaacatagtaatgcaatatataatattaat 10484364  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 10386360 - 10386270
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| | |||||| ||||  |||||| ||||| ||||| |||||||||||| |||| | ||| ||||| ||||||| ||||||| ||||    
T  10386360 atatgaggtagtaatcatatagattaaactagtgaaatatataagattaaaaaccaacgagcaacataataatgcaatctataatactaat 10386270  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 7608166 - 7608214
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  7608166 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 7608214  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 8577791 - 8577755
Alignment:
Q  243 aagaaacatattaaatcttgaccattgtattggttta 279  Q
    |||||||||||||||||||||  ||||||||||||||    
T  8577791 aagaaacatattaaatcttgattattgtattggttta 8577755  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 16705251 - 16705299
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  16705251 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 16705299  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 31280075 - 31280154
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  31280075 taataatatagattaaattagtgcaatatataagattaaaatttaacaagcaacataataatgcaatatataatactaat 31280154  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 29987878 - 29987968
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | |||||||||  |||||||||||||||||| |||||||||||  |||| | ||| ||||| | ||||||||||||| ||||    
T  29987878 atatgaagtaataataatatagattaaattagtgcaatatataagattaaaatccaacaagcaacataataaagcaatatataatactaat 29987968  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 36582418 - 36582491
Alignment:
Q  29 taataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataat 102  Q
    |||||||||  |||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||    
T  36582418 taataatatagattaaattagtgcaatatataagattaaaatttaacaagcaacataataatgcaatatataat 36582491  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 6714093 - 6714183
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||||| | || ||||||  ||||||||| |||||||| || ||||||||| |||| | ||| ||||| ||||||||||||||| ||||    
T  6714093 atatgaagtaatattaatatagattaaattaatgcaatatatatgattaaaaaccaacaagcaacataattatgcaatatataatactaat 6714183  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8937671 - 8937759
Alignment:
Q  18 atatgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatatta 106  Q
    |||||||| | |||||||||  ||||||||||| |||||| ||| |||||||| |||| | ||| ||||  || |||||||||||||||    
T  8937671 atatgaagtaataataatatagattaaattagtacaatatataatattaaaaaccaacaagcaacataacaattcaatatataatatta 8937759  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 27392803 - 27392755
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaa 68  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||    
T  27392803 atgaagtagtaataatatagattaaattaatgcaatatataagattaaa 27392755  T

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Target: scaffold0717 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 5707 - 5619
Alignment:
Q  20 atgaagcagtaataatatgaattaaattagtgcaatatttaagattaaaaatcaaccatcaagataatgatgcaatatataatattaat 108  Q
    |||||| | |||||||||  ||||||||| |||||||| ||||||||||| | ||| | ||| ||||| ||||||||||||||| ||||    
T  5707 atgaagtaataataatatagattaaattactgcaatatataagattaaaagttaacaagcaacataataatgcaatatataatactaat 5619  T

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