View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13885_low_6 (Length: 352)
Name: NF13885_low_6
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_low_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 36563555 - 36563227
Alignment:
| Q |
20 |
gtttggtcattattaattaatttaaatttagaggttgcacggttcccatttctaccaagggaaaagcaaattggatagaatatgtttgtcacacaaatcc |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563555 |
gtttggtcattattgattaatttaaatttagaggttgcacggttcccatt-ctaccaagggaaaagcaaattggatagaatatgtttgtcacacaaatcc |
36563457 |
T |
|
| Q |
120 |
tatgaactcatatgaagataaatacatacatacagccacagggacatgaagcaataagcagtcccaatatgatgagcccaacatttccattggtgtgcgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36563456 |
tatgaactcatatgaagataaatacatacatacagccacagggacatgaaacaataagcagtcccaatatga---gcccaacatttccattggtgtgcgc |
36563360 |
T |
|
| Q |
220 |
ataccagttggctaagcaacctatgaactcatagtcatagagattgtcaggtcaaatctctcccctgcctcattagtcattatatgtaacttttttagat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563359 |
ataccagttggctaagcaacctatgaactcatagtcatagagattgtcatgtcaaatctctcctctgcctcattagtcattatatgtaacttttttagat |
36563260 |
T |
|
| Q |
320 |
tattcttttacggtattaaaaatagagtcatgc |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
36563259 |
tattcttttacagtattaaaaatagagtcatgc |
36563227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University