View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13885_low_8 (Length: 329)
Name: NF13885_low_8
Description: NF13885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13885_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 24033702 - 24033429
Alignment:
| Q |
19 |
aactagcctagcaaggaagaccattttattcttctaaagtcttaacgcattaatcagagacactgtgttccatttcttacttatatataactaagtcttt |
118 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24033702 |
aactagcctagaaatgaagaccattttattcttctaaagtcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccaagtcttt |
24033603 |
T |
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| Q |
119 |
ggtgccttttacacatagttgtttgcatatcttccaaaccatacattcttcattttttacattctattccttaattcttgatacacaatacacaaatttt |
218 |
Q |
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||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
24033602 |
ggtgc-----------atttgttcgcatatcttccaaaccatacattcttcattttttacattctattccttaattcttgatacacaatgcacaaatctt |
24033514 |
T |
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| Q |
219 |
ttacattctattcctttaaaccatgcctttctcatccaaattacctttgattatgnnnnnnngttcccttattatccattcatct |
303 |
Q |
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|| | | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24033513 |
ataaaagccataattttaaaccatgcctttctcatccaaattacctttgattatgtttttttgttcccttattatccattcatct |
24033429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 24039165 - 24038894
Alignment:
| Q |
19 |
aactagcctagcaaggaagaccattttattcttctaaagtcttaacgcattaatcagagacactgtgttccatttcttacttatatataactaagtcttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| | || ||| |
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| T |
24039165 |
aactagcctagcaaggaagaccattttattcttctaaattcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccatgt-ttt |
24039067 |
T |
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| Q |
119 |
ggtgccttttacacatagttgtttgcatatcttccaaaccatacattcttcattttttacattctattccttaattcttgatacacaatacacaaatttt |
218 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24039066 |
ggtgccttttacacatagttgttcgcat------------atacattcttcattttttacattctattccttaattcttgatacacaatacacaaatctt |
24038979 |
T |
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| Q |
219 |
ttacattctattcctttaaaccatgcctttctcatccaaattacctttgattatgnnnnnnngttcccttattatccattcatct |
303 |
Q |
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|| | | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24038978 |
ataaaagccagaattttaaaccatgcctttctcatccaaattacctttgattatgtttttttgttcccttattatccattcatct |
24038894 |
T |
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