View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_high_13 (Length: 238)
Name: NF13886_high_13
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 21371461 - 21371245
Alignment:
| Q |
5 |
acgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21371461 |
acgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaat |
21371362 |
T |
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| Q |
105 |
caactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatgga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371361 |
caactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatgga |
21371262 |
T |
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| Q |
205 |
gcttcctggtgaaccct |
221 |
Q |
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||||||||||||||||| |
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| T |
21371261 |
gcttcctggtgaaccct |
21371245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 21386096 - 21386312
Alignment:
| Q |
5 |
acgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21386096 |
acgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaat |
21386195 |
T |
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| Q |
105 |
caactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatgga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386196 |
caactggtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatgga |
21386295 |
T |
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| Q |
205 |
gcttcctggtgaaccct |
221 |
Q |
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||||||||||||||||| |
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| T |
21386296 |
gcttcctggtgaaccct |
21386312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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