View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_high_3 (Length: 420)
Name: NF13886_high_3
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 3923520 - 3923921
Alignment:
| Q |
3 |
atccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttct |
102 |
Q |
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| T |
3923520 |
atccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttct |
3923619 |
T |
|
| Q |
103 |
tcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923620 |
tcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttcc |
3923719 |
T |
|
| Q |
203 |
ctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatcgtctgcttgaatcacagtgacctttacatacctaagggaagg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3923720 |
ctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatggtgtgcttgaatcacagtgacctttacatacctaagggaagg |
3923819 |
T |
|
| Q |
303 |
tgacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgtt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923820 |
tgacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatattcatctgcttgtgtt |
3923919 |
T |
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| Q |
403 |
cc |
404 |
Q |
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|| |
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| T |
3923920 |
cc |
3923921 |
T |
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