View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13886_low_1 (Length: 518)

Name: NF13886_low_1
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13886_low_1
NF13886_low_1
[»] scaffold0012 (1 HSPs)
scaffold0012 (356-505)||(166997-167148)
[»] chr4 (4 HSPs)
chr4 (210-355)||(9590148-9590293)
chr4 (78-257)||(9567385-9567579)
chr4 (259-355)||(9567759-9567855)
chr4 (407-505)||(25123659-25123759)
[»] chr2 (2 HSPs)
chr2 (358-505)||(18948920-18949070)
chr2 (438-505)||(9932913-9932981)
[»] chr1 (3 HSPs)
chr1 (376-498)||(42450458-42450582)
chr1 (396-505)||(7643166-7643277)
chr1 (438-505)||(40231112-40231179)
[»] chr5 (1 HSPs)
chr5 (455-505)||(27797536-27797586)
[»] chr7 (2 HSPs)
chr7 (438-505)||(21224055-21224123)
chr7 (104-148)||(1509969-1510013)
[»] chr3 (1 HSPs)
chr3 (105-153)||(45801197-45801245)


Alignment Details
Target: scaffold0012 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 356 - 505
Target Start/End: Original strand, 166997 - 167148
Alignment:
Q  356 tagagcttcctggtttggtctttggggttaagcaatttaattgtaattcttgtaattatgttttttaccttgtattgactca--tgtttcttctttggcg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||   |    
T  166997 tagagcttcctggtttggtctttggggttaagcaatttaattgtaattcttgtaattatgttttttaccttgtattgactcaggtgtttcttctttaatg 167096  T
Q  454 catcttgcgctgagaaggcctttttgtggtatataattcattttagcttctt 505  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  167097 catcttgcgctgagaagacctttttatggtatataattcattttagcttctt 167148  T

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Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 9590293 - 9590148
Alignment:
Q  210 atagcttaaaattcatctgcgagtgagaatagacacgttaaattaaaagacttgtagggcaagttagagtagataaaacatttgcatgaatagtgtaggg 309  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  9590293 atagcttaaaattcatctgcgagcgagaatagacgcgttaaattaaaaaacttgcagggaaagttagagtagataaaacatgtgcatgaatagtgtaggg 9590194  T
Q  310 ggacaacccatgtgcttaaaacttggtgattaagttatattgaatg 355  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  9590193 ggacaacccatgtgcttgaagcttggtgattaagttatattgaatg 9590148  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 9567385 - 9567579
Alignment:
Q  78 attctagtgaaaatcgagctgtttaagggaccatattcgtaaccacgtgtaaatagaagtatataataatagtatagtagtagtnnnnnnnnnttgaaaa 177  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||    
T  9567385 attctagtgaaaatcgagttgtttaagggaccatattcgtaaccacgtgtaaataaaagtatataataatagtatagtagtagtaaaaaaaatttgaaaa 9567484  T
Q  178 attggggggaccacagcca---------------cccctggttacaaatagcttaaaattcatctgcgagtgagaatagacacgttaaattaaaa 257  Q
    ||||||||||||| |||||               ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  9567485 attggggggaccatagccacccctggtctctccgcccctggttacgaatagcttaaaattcatctgcgagcgagaatagacgcgttaaattaaaa 9567579  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 9567759 - 9567855
Alignment:
Q  259 acttgtagggcaagttagagtagataaaacatttgcatgaatagtgtagggggacaacccatgtgcttaaaacttggtgattaagttatattgaatg 355  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9567759 acttgtagggcaagttagagtagataaaacatgtgcaagaatagtgtagggggacaacccatgtgcttgaaacttggtgattaagttatattgaatg 9567855  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 407 - 505
Target Start/End: Complemental strand, 25123759 - 25123659
Alignment:
Q  407 gtaattatgttttttaccttgtattgactca--tgtttcttctttggcgcatcttgcgctgagaaggcctttttgtggtatataattcattttagcttct 504  Q
    ||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  25123759 gtaattatgatttttaccttgtattgactcaggtgtttcttcttcggcgcatcttgcgctaagaagacctttttatggtatataattcattttagcttct 25123660  T
Q  505 t 505  Q
    |    
T  25123659 t 25123659  T

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Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 358 - 505
Target Start/End: Original strand, 18948920 - 18949070
Alignment:
Q  358 gagcttcctggtttggtcttt-ggggttaagcaatttaattgtaattcttgtaattatgttttttaccttgtattgactca--tgtttcttctttggcgc 454  Q
    |||||| |||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||    
T  18948920 gagcttgctgggttggtcttttggggtcaagcaatttcattgtaattcttgtaattatgttttttaccttgtattgactcaggtgtttcttcttcgacgc 18949019  T
Q  455 atcttgcgctgagaaggcctttttgtggtatataattcattttagcttctt 505  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  18949020 atcttgcgttgagaaagcctttttgtggtatataattcattttagtttctt 18949070  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 505
Target Start/End: Complemental strand, 9932981 - 9932913
Alignment:
Q  438 tgtttcttctttggcgcatcttgcgctgagaaggcctttttg-tggtatataattcattttagcttctt 505  Q
    ||||||||||| |||||||||||||||  ||||||| | ||| || ||||| |||||||||| ||||||    
T  9932981 tgtttcttcttgggcgcatcttgcgctcggaaggccctcttgatgttatatcattcattttaacttctt 9932913  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 376 - 498
Target Start/End: Complemental strand, 42450582 - 42450458
Alignment:
Q  376 tttggggttaagcaatttaattgtaattcttgtaattatgttttttaccttgtattgactca--tgtttcttctttggcgcatcttgcgctgagaaggcc 473  Q
    |||||| | ||||||||| ||||||||||||||||||||| | |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  42450582 tttgggctcaagcaatttcattgtaattcttgtaattatgatgtttaccttgtattgactcaggtgtttcttcttcggcgcatcttgcgctgagaaggcc 42450483  T
Q  474 tttttgtggtatataattcatttta 498  Q
    |||||||||||||||||||||||||    
T  42450482 tttttgtggtatataattcatttta 42450458  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 505
Target Start/End: Original strand, 7643166 - 7643277
Alignment:
Q  396 ttgtaattcttgtaattatgttttttaccttgtattgactca--tgtttcttctttggcgcatcttgcgctgagaaggcctttttgtggtatataattca 493  Q
    |||||||| ||||||||||  |  ||||||||| |||||| |  |||||| |||||||||||||||||| |  ||||||| |||| |||||||||||| |    
T  7643166 ttgtaattattgtaattattgtacttaccttgttttgactaaggtgtttcctctttggcgcatcttgcgttcggaaggcccttttatggtatataattta 7643265  T
Q  494 ttttagcttctt 505  Q
    ||||| ||||||    
T  7643266 ttttaacttctt 7643277  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 505
Target Start/End: Complemental strand, 40231179 - 40231112
Alignment:
Q  438 tgtttcttctttggcgcatcttgcgctgagaaggcctttttgtggtatataattcattttagcttctt 505  Q
    |||||||||||| ||||||||| | || | ||||||||||| | ||||||||||||||||| ||||||    
T  40231179 tgtttcttcttttgcgcatcttacactcaaaaggcctttttatagtatataattcattttaacttctt 40231112  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 455 - 505
Target Start/End: Complemental strand, 27797586 - 27797536
Alignment:
Q  455 atcttgcgctgagaaggcctttttgtggtatataattcattttagcttctt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27797586 atcttgcgctgagaaggcctttttgtggtatataattcattttagcttctt 27797536  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 505
Target Start/End: Complemental strand, 21224123 - 21224055
Alignment:
Q  438 tgtttcttctttggcgcatcttgcgc--tgagaaggcctttttgtggtatataattcattttagcttctt 505  Q
    |||||||||||||| | |||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  21224123 tgtttcttctttggtggatcttgcgcgctgagaaggccttttt-tggtatataattcattttagcttctt 21224055  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 1510013 - 1509969
Alignment:
Q  104 gggaccatattcgtaaccacgtgtaaatagaagtatataataata 148  Q
    |||||||||||| |||||| |||||||||| | ||||||||||||    
T  1510013 gggaccatattcttaaccatgtgtaaatagcattatataataata 1509969  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 45801245 - 45801197
Alignment:
Q  105 ggaccatattcgtaaccacgtgtaaatagaagtatataataatagtata 153  Q
    ||||||||||| | ||||  ||||||||| |||||||||||||||||||    
T  45801245 ggaccatattcatgaccatatgtaaatagtagtatataataatagtata 45801197  T

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