View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_10 (Length: 274)
Name: NF13886_low_10
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 52369450 - 52369700
Alignment:
| Q |
1 |
caaaattagatatttataaattagcagccaggccatatagtagttgaatatttattatattggtcaaaaccaaataattgcattcatttgttcaacaaat |
100 |
Q |
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| T |
52369450 |
caaaattatatatttataaattagcagccatgccatatagtagttgaatatttattatattggtcaaaaccaaataattgcattcatttgttcaacaaat |
52369549 |
T |
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| Q |
101 |
tatgatatctgtcatcatcgtatagtaaagtttcatagttagcctccaataagtgtactcaattaactttg--aaactagttagttatgtatttagttta |
198 |
Q |
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| T |
52369550 |
tatgatatctgtcatcatcgtatagtaaagtttcatagttagcctccaataagtgtactcaattaactttgaaaaactagttagttatgt---------- |
52369639 |
T |
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| Q |
199 |
aatttagtaagaatgatttaccgttgttgttgtatggtgtat--gagtacttggaatgaagatat |
261 |
Q |
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| T |
52369640 |
-atttagtaagaatgatttacc---gttgttgtatggtgtatgagagtacttggaatgaagatat |
52369700 |
T |
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