View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_14 (Length: 243)
Name: NF13886_low_14
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 11850149 - 11850364
Alignment:
| Q |
17 |
cttaccacagtagttcaaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttg |
116 |
Q |
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| T |
11850149 |
cttaccacagtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagcttcggagttg |
11850248 |
T |
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| Q |
117 |
ttcttgctgaacttttaactggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttattcagtgtatagaggagga |
216 |
Q |
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| T |
11850249 |
ttcttgctgaacttttaacgggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttattcagtgtatagaggagga |
11850348 |
T |
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| Q |
217 |
tatgttgtttgatatt |
232 |
Q |
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|||||||||||||||| |
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| T |
11850349 |
tatgttgtttgatatt |
11850364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 11845420 - 11845631
Alignment:
| Q |
17 |
cttaccacagtagttcaaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttg |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||| ||||| | |
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| T |
11845420 |
cttaccacggtagttcaaggtacttttggttacttagaccctgagtactttcatacaagtcaatttaccgagaaaagtgatgtatttagcttcggagtag |
11845519 |
T |
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| Q |
117 |
ttcttgctgaacttttaactggtaagaagccaatatctgcaataggatctggggaataccaaaatttagcttcctattttattcagtgtatagaggagga |
216 |
Q |
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| T |
11845520 |
ttcttgctgaacttttaaccggtaagaagccggtatcctctataggatctggcgaataccaaagtttagcttcctattttattgagtgtatagatgagaa |
11845619 |
T |
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| Q |
217 |
tatgttgtttga |
228 |
Q |
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|||||||||||| |
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| T |
11845620 |
tatgttgtttga |
11845631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 1843158 - 1843248
Alignment:
| Q |
32 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
122 |
Q |
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| T |
1843158 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1843248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 1857169 - 1857259
Alignment:
| Q |
32 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
122 |
Q |
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| T |
1857169 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 1868767 - 1868857
Alignment:
| Q |
32 |
caaggtacttttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
122 |
Q |
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| T |
1868767 |
caaggaactattggctacttagatccagagtatatgcaaacaagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1868857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 1815836 - 1815785
Alignment:
| Q |
71 |
acaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttg |
122 |
Q |
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| T |
1815836 |
acaagccaattaactgagaaaagtgatgtatatagctttggagtagttcttg |
1815785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 9118765 - 9118846
Alignment:
| Q |
42 |
ttggttacttagaccccgagtactttcatacaagtcaatttactgagaaaagtgatgtgtacagctttggagttgttcttgc |
123 |
Q |
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|||| ||||||||||| |||||| | || || |||||| || |||||||||||||| || ||||||||||| |||||||| |
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| T |
9118765 |
ttggatacttagacccagagtacatgcaaacgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgc |
9118846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 20550083 - 20550043
Alignment:
| Q |
81 |
ttactgagaaaagtgatgtgtacagctttggagttgttctt |
121 |
Q |
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| T |
20550083 |
ttactgagaaaagtgatgtatatagttttggagttgttctt |
20550043 |
T |
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