View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_16 (Length: 237)
Name: NF13886_low_16
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33368548 - 33368326
Alignment:
| Q |
1 |
tgtctattaaattt-caatagtgaccaaattacactgaaaatccttgagagcattgtcatcaaatcttacactatttcagcatttatttgttttgtaagt |
99 |
Q |
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| T |
33368548 |
tgtctattaaattttcaatagtgagcaaattacactgaaaatccttgagagcattgtcatcaaatctcacactatttcaccatttatttgttttgtaagt |
33368449 |
T |
|
| Q |
100 |
ctctgtgcatacgattagatactcaaatac-aaagaagcattattcaaaaatgcatgtacttatctcattcttgatagagtgataatactatttgttctc |
198 |
Q |
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|| |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368448 |
ctatgtgcatacgatcagatactcaaatacaaaagaagcattattcaaaaatacatgtacttatctcattcttgatagagtgataatactatttgttctc |
33368349 |
T |
|
| Q |
199 |
tctattccccaaaaagaaaaatg |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
33368348 |
tctattccccaaaaagaaaaatg |
33368326 |
T |
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