View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_4 (Length: 372)
Name: NF13886_low_4
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 4824537 - 4824887
Alignment:
| Q |
6 |
gtagataattctaagctattgagtcgttggatgaaacttaattttacgcttggttattctttgtgtgggaagcatgggtgccttgaatgatggtgatggg |
105 |
Q |
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| T |
4824537 |
gtagaaaattctaagctattgagtcgttggatgaaacttaattttacgcttggttattctttgtgtgggaagcatgggtgccttgaatgatggtgatggg |
4824636 |
T |
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| Q |
106 |
acatattagttttatttatctcctcacatgtccctttctctactacttctcttattggtttggcatttctctgatggacattctccttctcttctccctt |
205 |
Q |
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| T |
4824637 |
acatattagttttatttatctcctcacatgtccctttctctacttcttctcttattggtttggcatttctctgatggacattctccttctcttctccctt |
4824736 |
T |
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| Q |
206 |
atttggatcctctaaaccttaaccatcacaattgaagcaaaatattcacaccgaatttatcaacattttgaaacaaaatatttactttagcagaaatatg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4824737 |
atttggatcctctaaaccttaaccatcacaattgaagcaaaatattcacaccgaatttatcaacattttgaaacaaaatatttactttagcataaatatg |
4824836 |
T |
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| Q |
306 |
atccaagttaaagcattgtcatcatgcatgtttcttctcttgagtggatag |
356 |
Q |
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| T |
4824837 |
atccaagttaaagcattgtcatcatgcatgtttcttctcttgagtggatag |
4824887 |
T |
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