View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_6 (Length: 327)
Name: NF13886_low_6
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 124419 - 124739
Alignment:
| Q |
1 |
aggaagaaagaagaagataccagagcccatagattcacgctgagacttattctgccaaggaagcaaataattaggactgcatgaaacagtgaaaatcttg |
100 |
Q |
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| T |
124419 |
aggaagaaagaagaagataccagagcccatagattcacgctgagatttgttctgccaaggaagcaaataattaggactgcatgaaacagtgaaaatcttg |
124518 |
T |
|
| Q |
101 |
acaacagaattgaaagcaagctcaacagcagtattagtagtatgtgtcaatgcggcggcgctgcgtggttgaatcttcttcc------------ttactc |
188 |
Q |
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| T |
124519 |
acaacggaattgaaagcaagctcaacagcagtattagtagtatgtgtcaatgcggcggcgctacgtggttgaatattcttcctttctcttcttattcctc |
124618 |
T |
|
| Q |
189 |
ttactggtgatgttgttgttatgaatgtttgattttgttgggtctgagtctgagtgtgagtgtgagtgtgaggaacaagtgaaaatgattgagaagcgag |
288 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
124619 |
ttactgatgatgttgttgttatgaatgtttgattttgttgggtatgagtctgagtctga---tgagtgtgaggaacaagtgaaaatgattgagaagcgag |
124715 |
T |
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| Q |
289 |
ataacgagatgagaaagcattcct |
312 |
Q |
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|||||||||||||||| ||||||| |
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| T |
124716 |
ataacgagatgagaaaacattcct |
124739 |
T |
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